Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq454 129 8e-25 seq78 91.5 2e-13 >seq454 Length=20063581 Score = 129 bits (142), Expect = 8e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 213995 CAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTT 214054 ||||| || || || ||| | |||||||| || || ||| | | | | ||| | Sbjct 19790411 CAGATGATCGATGGTGAAATGTACCCTCCGACGGTGCGGGACACACAGGCAGAGATGCTG 19790352 Query 214055 TACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 ||| |||| ||| ||||| | | || ||| | |||| | ||| |||| || || Sbjct 19790351 TACCCACCCCACGTGCCCGAGCACCTGCGCTTCTCYGTGGGGCAGGAGGTGTTCGGGCTG 19790292 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 ||||| || ||||| ||||||||| ||||||||| | ||||||||| | || |||||| Sbjct 19790291 GTGCCGGGGCTCATGATGTACGCCACGATCTGGCTGCGCGAGCACAACCGCGTCTGCGAC 19790232 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 ||||| || || ||||||| || ||| ||||||| ||||| ||||||| Sbjct 19790231 GTGCTCAAGCACCAGCACCCCGAGTGGGACGACGAGCAGCTCTTCCAGA 19790183 Score = 111 bits (122), Expect = 2e-19 Identities = 198/289 (69%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 || ||||| || | |||||||||| | ||||| || ||||| ||| | || || ||| Sbjct 19788531 AAAGAGATGGCAGCGGAGCTGGAGGAGCTGTACGGGGACATCGATGCCATGGAGCTGTAC 19788472 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724 | | | || | || || || | |||| |||||| | || || | | | ||| Sbjct 19788471 CCAGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTTGGGGAGACCATGGTGGAG 19788412 Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784 ||||| || |||||||||| ||| || || |||| |||||||||||| | ||| Sbjct 19788411 ATTGGGGCCCCATTCTCCCTGAAGGGGCTGATGGGCAACGCCATCTGCTCCCCCGAGTAC 19788352 Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844 ||||| | || ||| |||| || | | | ||| ||||||| | | || |||| Sbjct 19788351 TGGAAGCCCAGCACCTTCGGGGGCAAGGTGGGCTTCGACATCGTCAACACGGCCTCCCTG 19788292 Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893 ||| |||||||| | |||||| ||||| ||||| || |||| |||| Sbjct 19788291 CAGAAGCTCATCTGCAACAACGTGAAGGGCTGTCCCTTCACCGCCTTCC 19788243 >seq78 Length=4401391 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 214004 GACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTTACGAACCC 214063 || || || || ||||| || || |||| ||||||| ||||| ||||| ||| | Sbjct 3357333 GATGGCGAGGTGTACCCGCCCACGGTCAGCGAGGCCCCGGTGCACATGGTGTACCCGTCG 3357392 Query 214064 AGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCGTGCCCGGT 214123 |||| ||| | | | || |||| | ||| |||| || || |||| || Sbjct 3357393 GGCGTGCCCCCGGATCGGCAGCTGGCCGTGGGGCAGGAGGTGTTCGGGCTGCTGCCGGGG 3357452 Query 214124 TTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACGTGCTGAAA 214183 || |||||||||| |||||||| ||||||||||| | || |||||| |||| || Sbjct 3357453 CTCTGCGTGTACGCCACGCTCTGGCTGCGAGAGCACAACCGCGTCTGCGACCTGCTCAAG 3357512 Query 214184 CAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 | || ||||| |||| |||||| ||||| ||||||| Sbjct 3357513 CGGGAACACCCCACCTGGAGCGACGAGCAGCTCTTCCAGA 3357552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723294732232800