Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq290 107 6e-18 seq3 100 9e-16 seq78 98.7 3e-15 seq319 86.0 2e-11 >seq290 Length=3199669 Score = 107 bits (118), Expect = 6e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 140537 AAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTT 140596 ||| || || || || || || || || ||||| | || ||||| ||||| || || || Sbjct 2645029 AAGGGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTT 2644971 Query 140597 TCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGC 140656 ||||||||||| || | ||||| ||||||||||| ||||| || ||||| || || || Sbjct 2644970 GCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTGGC 2644911 Query 140657 TTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || ||||| || | | ||| || || || || || || | ||||| || || || Sbjct 2644910 CTTCACATTCTCGA-GGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAG 2644852 Query 140717 TGTTTTTACAAAAATCTGCAT 140737 || || ||||| |||||||| Sbjct 2644851 GGTCTTCACAAAGATCTGCAT 2644831 Score = 91.5 bits (100), Expect = 4e-13 Identities = 152/215 (71%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA--TCAGATAATGTTCGCCCAT 140583 || || || || || || || || || || || || | | ||||| | || || |||| Sbjct 2645723 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGACCAT 2645664 Query 140584 CTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTAT 140643 | || || || || ||||||||||| || | ||||| || || ||||| || || || | Sbjct 2645663 CCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGT 2645604 Query 140644 CCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA-ACTTCAAGTGTAACT 140702 |||| || || || || || || || || | ||| ||| ||| || || || || | | Sbjct 2645603 CCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCA-CTGGCTCACACCTCCAGAGTGA-T 2645546 Query 140703 GTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || || || ||||| |||||||| Sbjct 2645545 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645511 >seq3 Length=2727613 Score = 100 bits (110), Expect = 9e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| | ||||| ||||||||||| || || ||||||| || || ||||||| Sbjct 2554015 ATGCTGTAGTGACTGTCCCAGCCTATTTCAAYGACTCCCAGCGCCAGGCCACCAAAGATG 2554074 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | |||||| ||| | || || || || || || || || ||||| || || || | Sbjct 2554075 CTGGAACCATTGCAGGGCTCAACGTCCTGAGGATCATCAACGAGCCCACAGCAGCTGCCA 2554134 Query 349728 TTGCATATGGGCTTGATAA 349746 |||| |||||||| || || Sbjct 2554135 TTGCCTATGGGCTGGACAA 2554153 >seq78 Length=4401391 Score = 98.7 bits (108), Expect = 3e-15 Identities = 126/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| || || || ||| || ||| || || || ||| Sbjct 4155034 ACAGCTGCTGCCATTGCTTATGGACTGGACAA---GAGAGAGGGAGAGAAGAACATCCTT 4154978 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| | || ||||| ||||||||||| || || || ||| |||| | ||| | Sbjct 4154977 GTATTTGACCTGGGCGGTGGAACTTTTGATGTGTCCCTCCTCACAATTGACAACGGAGTC 4154918 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || ||| ||| || || || || ||||||||||| ||||| Sbjct 4154917 TTTGAAGTTGTGGCTACTAATGGAGACACTCACCTGGGTGGAGAAGACTTTGA 4154865 >seq319 Length=32890058 Score = 86.0 bits (94), Expect = 2e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | |||||| ||||| || | |||||||||||| ||||| | Sbjct 31275677 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 31275618 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| || ||||| || || ||||| ||| |||| Sbjct 31275617 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAA 31275558 Query 223839 ACGCTAC 223845 | || || Sbjct 31275557 AGGCCAC 31275551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515155484666285