Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 2e-12 >seq1 Length=1900206 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 ||||||| ||| | ||| | ||| || ||||||| || ||||||||||||| Sbjct 1361567 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 1361626 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| ||||||||||||| ||| |||| |||||||||| |||||| || || || Sbjct 1361627 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCC 1361686 Query 79200 GGTCTC 79205 ||||| Sbjct 1361687 AGTCTC 1361692 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 20089 GCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGG 20148 ||| |||||||| |||| || ||||| ||||||||||| |||| ||||| || | | Sbjct 1358999 GCGGCACCGGCCCATCGGCATTGGCGTGCAGGGCCTGGCTGACGCCTTCATCCTGATGAG 1358940 Query 20149 CCTCTCATTCGACGATC-CCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGT 20207 || | ||||| || | || |||| | |||||| || |||||||||| || | | Sbjct 1358939 GTTCCCCTTCGA-GAGCGCCCAGGCTCAGCTCCTCAACCAGCACATCTTCGAGACCATCT 1358881 Query 20208 ACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGT 20267 || ||| |||||| || || || || |||| ||| | ||||| ||||| || | Sbjct 1358880 ACTACGGGGCCCTGGAGGCCAGCTGTGAGCTGGCCAGGGAGCAGGGCCCCTACGACACCT 1358821 Query 20268 TCAAGGGGTCGCC 20280 | |||| ||||| Sbjct 1358820 ACCAGGGCTCGCC 1358808 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||| ||||| || |||||||| ||||||||||| ||||||||||| || || ||| Sbjct 1364179 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATTGAAGGCATCTACGACACCCTGAAG 1364120 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 |||| || | ||||||||||| | ||||| || || Sbjct 1364119 CAGTGTGCCCTCATCTCCAAGTCTGCTGGGGGCATTGG 1364082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548489865826800