Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq290 165 9e-36 seq408 129 7e-25 seq1 105 8e-18 >seq290 Length=3199669 Score = 165 bits (182), Expect = 9e-36 Identities = 172/221 (78%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGT-TGAGTCAGG 27464 ||||| |||||||| ||||| || || |||||||| || ||||| ||||| |||| ||| Sbjct 2645511 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGAC-ATCACTCTGGAGGTGTGAGCCAG- 2645568 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 2645569 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 2645628 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT--AT 27582 |||| | || || |||||||| ||||| || ||||||| ||| ||||| | |||| | Sbjct 2645629 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTTAAC 2645688 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 || |||| ||||||||||| || || || || |||| || Sbjct 2645689 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCT 2645729 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | || Sbjct 2644374 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 2644433 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||| ||||| |||| || |||||| Sbjct 2644434 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCTTTCCCCCCGACCAG 2644493 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || ||||| | || ||||| | || || || Sbjct 2644494 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGGCGCACCCTGTCTGATTACAAC 2644553 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || || || |||| || | ||||| Sbjct 2644554 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 2644600 Score = 152 bits (168), Expect = 6e-32 Identities = 156/201 (78%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||| ||||| ||| | || Sbjct 2644831 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 2644890 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | | | | ||| ||||||| || || ||||||||||| || |||||||| |||||| Sbjct 2644891 GACACC-TCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCTCCTGACCAG 2644949 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || || | || ||||| | ||||| || Sbjct 2644950 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA-AAC 2645008 Query 27586 GTCCAAAAGGAATCCACTCTT 27606 |||| ||||||||||| ||| Sbjct 2645009 ATCCAGAAGGAATCCACCCTT 2645029 Score = 149 bits (164), Expect = 7e-31 Identities = 173/228 (76%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 27406 ATGCAAAT-CTTTGTCAAGACGCTTACCGGCAAGA-CTATTACTCTTGAGGTTGAGTCAG 27463 ||||| || |||||| ||||| || || ||||| | | || || || || || || ||| Sbjct 2645056 ATGCAGATTCTTTGTGAAGACCCTGACTGGCAAAAACCATCACCCTGGAAGTCGAACCAG 2645115 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 ||| | ||||| ||| ||||||| || || ||||||||| |||| ||||| ||||||| Sbjct 2645116 -TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAG-AGGGCATTCCCCCAGACC 2645173 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | || || ||||| || ||||| || || |||| ||| ||||| | ||||| | Sbjct 2645174 AGCAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACA 2645233 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 | |||| ||||||||||| || || || || ||||||| | |||| Sbjct 2645234 ACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTG 2645281 Score = 123 bits (136), Expect = 3e-23 Identities = 167/229 (73%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 27406 ATGCAA-ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || || ||||| || || || ||||| ||| | | Sbjct 2644602 ATGCAAGATCTTTGTGAAGACCCTGACTGGTAAGAC-ATCACCCTGGAGGTGGAGCCCAG 2644660 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | || || || || |||||||||||||| ||||| || ||||| Sbjct 2644661 TGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCA 2644720 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || || ||||| ||||| || || || | || ||||| | ||||| || Sbjct 2644721 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAA 2644780 Query 27585 TGTCCAAAAGGAATCCACTCTTCA-TCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || ||||| || || || |||| || | ||||| Sbjct 2644781 CATCCAGAAAGAGTCAACTCTGCACCCTGGTGCTGCGCCTCAGGGGTGG 2644829 Score = 123 bits (136), Expect = 3e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||| | |||||| | || Sbjct 2645283 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGGAGTTGAGCCCAGT 2645342 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC-TCCAGACCA 27524 || | ||| | ||| | || || || || ||||||||||| || || || ||| |||| Sbjct 2645343 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTTCCTGACC- 2645401 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGG-ATGATCGTACCCTAGCAGACTATA 27583 |||| | || || || ||||| ||||| || |||| ||| || ||||| | ||||| | Sbjct 2645402 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGAATGGGCGCACCCTCTCTGACTACA 2645461 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| || || | |||||| || || || |||| || | ||||| Sbjct 2645462 ACATCCAGAAAGAGT-CACTCTGCACCTGGTGCTGCGCCTCAGGGGTGG 2645509 >seq408 Length=880842 Score = 129 bits (142), Expect = 7e-25 Identities = 172/229 (75%), Gaps = 9/229 (4%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || |||| || ||| || || Sbjct 118320 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCAC-CTTGGAGTCGAGCCA-GT 118263 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAAT-TCCTCCAGACCA 27524 || | ||||| ||| | || || || || || ||||||||||| || |||||| ||||| Sbjct 118262 GACACCATTGAGAATGTCAA-GCCAAGATCCAAGACAAGGAGGGCATCTCCTCCTGACCA 118204 Query 27525 GCAGCG-TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| | || || || | || |||| ||| || |||| |||||||| | ||||| | Sbjct 118203 GCAGAGCGCTGATCTT--CAGGCAAGC-ACTGGAAGATGGCCGTACCCTGTCTGACTACA 118147 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| || ||||||||||| || || || |||| || | ||||| Sbjct 118146 ACATCCAGAAAGAATCCACTCTGCA-CTTGTGCTGCGCCTCAGGGGTGG 118099 Score = 123 bits (136), Expect = 3e-23 Identities = 147/193 (76%), Gaps = 5/193 (3%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAA-GACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||| |||||||||||||| || || ||||| ||| || || |||||||| ||| | | Sbjct 118097 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAAGACCATCAC-CTTGAGGTCGAGCCCAG 118039 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || || ||||||||||| || | |||||| ||||| Sbjct 118038 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCA-TCCTCCTGACCA 117980 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | || | || || || || || ||||| || || |||| |||||||| | ||||| || Sbjct 117979 G-AGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 117921 Query 27585 -TGTCCAAAAGGA 27596 |||| ||||| Sbjct 117920 CATTCCAGAAGGA 117908 >seq1 Length=1900206 Score = 105 bits (116), Expect = 8e-18 Identities = 156/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 80573 CCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACA---CGACT 80629 |||| || ||| | | || ||||| ||||||| | | ||||||||||||| | || Sbjct 1358806 CCGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCT 1358865 Query 80630 CCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTG 80689 || |||||| ||| || ||| ||| |||| | || ||| | | ||||| | Sbjct 1358866 CC---AGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGAGCTGAGCCTGGG 1358922 Query 80690 GGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGG 80749 | ||||| | || | ||||| ||||| |||||||||||||||| ||||| ||| Sbjct 1358923 CGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCAATGC 1358982 Query 80750 CGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGG 80789 |||| || ||||| ||| ||| || |||||||||| ||| Sbjct 1358983 CGATGGGCCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGG 1359022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570274078356400