Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq290 165 9e-36
seq408 129 7e-25
seq1 105 8e-18
>seq290
Length=3199669
Score = 165 bits (182), Expect = 9e-36
Identities = 172/221 (78%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGT-TGAGTCAGG 27464
||||| |||||||| ||||| || || |||||||| || ||||| ||||| |||| |||
Sbjct 2645511 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGAC-ATCACTCTGGAGGTGTGAGCCAG- 2645568
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||| | || ||||||| || || |||||||||||||| ||||| || |||||
Sbjct 2645569 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 2645628
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT--AT 27582
|||| | || || |||||||| ||||| || ||||||| ||| ||||| | |||| |
Sbjct 2645629 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTTAAC 2645688
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|| |||| ||||||||||| || || || || |||| ||
Sbjct 2645689 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCT 2645729
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | ||
Sbjct 2644374 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 2644433
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || ||||||| || || |||||||| ||||| |||| || ||||||
Sbjct 2644434 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCTTTCCCCCCGACCAG 2644493
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || ||||| || ||||| || ||||| | || ||||| | || || ||
Sbjct 2644494 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGGCGCACCCTGTCTGATTACAAC 2644553
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| || || || || |||| || | |||||
Sbjct 2644554 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 2644600
Score = 152 bits (168), Expect = 6e-32
Identities = 156/201 (78%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || ||||| ||||| ||| | ||
Sbjct 2644831 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 2644890
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | | | | ||| ||||||| || || ||||||||||| || |||||||| ||||||
Sbjct 2644891 GACACC-TCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCTCCTGACCAG 2644949
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||||| || || || | || ||||| | ||||| ||
Sbjct 2644950 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA-AAC 2645008
Query 27586 GTCCAAAAGGAATCCACTCTT 27606
|||| ||||||||||| |||
Sbjct 2645009 ATCCAGAAGGAATCCACCCTT 2645029
Score = 149 bits (164), Expect = 7e-31
Identities = 173/228 (76%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 27406 ATGCAAAT-CTTTGTCAAGACGCTTACCGGCAAGA-CTATTACTCTTGAGGTTGAGTCAG 27463
||||| || |||||| ||||| || || ||||| | | || || || || || || |||
Sbjct 2645056 ATGCAGATTCTTTGTGAAGACCCTGACTGGCAAAAACCATCACCCTGGAAGTCGAACCAG 2645115
Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523
||| | ||||| ||| ||||||| || || ||||||||| |||| ||||| |||||||
Sbjct 2645116 -TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAG-AGGGCATTCCCCCAGACC 2645173
Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583
||||| | || || ||||| || ||||| || || |||| ||| ||||| | ||||| |
Sbjct 2645174 AGCAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACA 2645233
Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631
| |||| ||||||||||| || || || || ||||||| | ||||
Sbjct 2645234 ACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTG 2645281
Score = 123 bits (136), Expect = 3e-23
Identities = 167/229 (73%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 27406 ATGCAA-ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| ||||| || || || ||||| || || || ||||| ||| | |
Sbjct 2644602 ATGCAAGATCTTTGTGAAGACCCTGACTGGTAAGAC-ATCACCCTGGAGGTGGAGCCCAG 2644660
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||| | ||| | || || || || |||||||||||||| ||||| || |||||
Sbjct 2644661 TGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCA 2644720
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | | || || ||||| ||||| || || || | || ||||| | ||||| ||
Sbjct 2644721 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAA 2644780
Query 27585 TGTCCAAAAGGAATCCACTCTTCA-TCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || || ||||| || || || |||| || | |||||
Sbjct 2644781 CATCCAGAAAGAGTCAACTCTGCACCCTGGTGCTGCGCCTCAGGGGTGG 2644829
Score = 123 bits (136), Expect = 3e-23
Identities = 168/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || ||||| | |||||| | ||
Sbjct 2645283 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGGAGTTGAGCCCAGT 2645342
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC-TCCAGACCA 27524
|| | ||| | ||| | || || || || ||||||||||| || || || ||| ||||
Sbjct 2645343 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTTCCTGACC- 2645401
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGG-ATGATCGTACCCTAGCAGACTATA 27583
|||| | || || || ||||| ||||| || |||| ||| || ||||| | ||||| |
Sbjct 2645402 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGAATGGGCGCACCCTCTCTGACTACA 2645461
Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||| || || | |||||| || || || |||| || | |||||
Sbjct 2645462 ACATCCAGAAAGAGT-CACTCTGCACCTGGTGCTGCGCCTCAGGGGTGG 2645509
>seq408
Length=880842
Score = 129 bits (142), Expect = 7e-25
Identities = 172/229 (75%), Gaps = 9/229 (4%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| || || |||||||| || || |||| || ||| || ||
Sbjct 118320 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCAC-CTTGGAGTCGAGCCA-GT 118263
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAAT-TCCTCCAGACCA 27524
|| | ||||| ||| | || || || || || ||||||||||| || |||||| |||||
Sbjct 118262 GACACCATTGAGAATGTCAA-GCCAAGATCCAAGACAAGGAGGGCATCTCCTCCTGACCA 118204
Query 27525 GCAGCG-TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583
|||| | || || || | || |||| ||| || |||| |||||||| | ||||| |
Sbjct 118203 GCAGAGCGCTGATCTT--CAGGCAAGC-ACTGGAAGATGGCCGTACCCTGTCTGACTACA 118147
Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||| || ||||||||||| || || || |||| || | |||||
Sbjct 118146 ACATCCAGAAAGAATCCACTCTGCA-CTTGTGCTGCGCCTCAGGGGTGG 118099
Score = 123 bits (136), Expect = 3e-23
Identities = 147/193 (76%), Gaps = 5/193 (3%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAA-GACTATTACTCTTGAGGTTGAGTCAGG 27464
||||| |||||||||||||| || || ||||| ||| || || |||||||| ||| | |
Sbjct 118097 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAAGACCATCAC-CTTGAGGTCGAGCCCAG 118039
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||||| ||| | ||||| || || ||||||||||| || | |||||| |||||
Sbjct 118038 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCA-TCCTCCTGACCA 117980
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
| || | || || || || || ||||| || || |||| |||||||| | ||||| ||
Sbjct 117979 G-AGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 117921
Query 27585 -TGTCCAAAAGGA 27596
|||| |||||
Sbjct 117920 CATTCCAGAAGGA 117908
>seq1
Length=1900206
Score = 105 bits (116), Expect = 8e-18
Identities = 156/220 (71%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 80573 CCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACA---CGACT 80629
|||| || ||| | | || ||||| ||||||| | | ||||||||||||| | ||
Sbjct 1358806 CCGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCT 1358865
Query 80630 CCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTG 80689
|| |||||| ||| || ||| ||| |||| | || ||| | | ||||| |
Sbjct 1358866 CC---AGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGAGCTGAGCCTGGG 1358922
Query 80690 GGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGG 80749
| ||||| | || | ||||| ||||| |||||||||||||||| ||||| |||
Sbjct 1358923 CGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCAATGC 1358982
Query 80750 CGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGG 80789
|||| || ||||| ||| ||| || |||||||||| |||
Sbjct 1358983 CGATGGGCCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGG 1359022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570274078356400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |