Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq290 109 3e-19 >seq290 Length=3199669 Score = 109 bits (120), Expect = 3e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || |||| ||||| || || ||| ||||| || ||||| ||||| || Sbjct 2644601 GCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 2644542 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| |||| || || || || || ||||| || | | ||| ||||| || || Sbjct 2644541 CAGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGG 2644482 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | ||||| ||||| |||||| | || ||| | ||| ||||| | ||||| Sbjct 2644481 AAAGCCCTCTTTGTCCTGGATCTTG-GCCTTCACGTTCTCAATGGTGTCACTGGGCTCCA 2644423 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 | || | ||| || || || || || | || |||||||| ||||||||||||| Sbjct 2644422 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGA 2644369 Score = 89.7 bits (98), Expect = 3e-13 Identities = 163/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAA-TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||| || || || |||| ||||| || ||||| ||| || || ||||| || || | Sbjct 2644830 GCCACCCCTGAGGCGCAGCACCAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAG 2644771 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || ||| ||||||| || || || || || || || || | ||| ||||| || | Sbjct 2644770 AGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGG 2644711 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | ||| || | || ||||| | |||| Sbjct 2644710 GAATGCCCTCCTTGTCCTGGATC-TTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCC 2644652 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATC-TGCATG 34707 || |||| ||| || || ||||| || | || |||||||| ||| |||||| Sbjct 2644651 ACCTCCAGGGTGAT-GTCTTACCAGTCAGGGTCTTCACAAAGATCTTGCATG 2644601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314710056767135