Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq959 113 4e-20 seq113 102 7e-17 >seq959 Length=5826524 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || |||||||||||||| ||||| |||||||| | ||||| || ||||| ||| Sbjct 5606756 GTGGTGGAGGAGCTCTTCCGAGACGGGGTTAACTGGGGCAGAATTGTGGCCTTCTTCGAG 5606697 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 ||||| ||||| ||||| ||||| |||||||| | | || | |||||| |||| | Sbjct 5606696 TTTGGCGGTGTGATGTGCGTGGAGAGCGTCAACCGGGAGATGTCTCACCTCGTGGACAGC 5606637 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || || || |||||||| || Sbjct 5606636 ATCGCTGCCTGGATGACCGA 5606617 >seq113 Length=61408302 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || |||||||||||||| | || |||||||| | ||||||||| Sbjct 20011624 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 20011683 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||||||| | || ||||| || | ||||||||| | || || ||| | Sbjct 20011684 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 20011743 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || || ||||||| | |||| Sbjct 20011744 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 20011784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414451062933580