Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq290 159 8e-34 seq408 147 5e-30 seq81 109 1e-18 seq26 98.7 2e-15 >seq290 Length=3199669 Score = 159 bits (176), Expect = 8e-34 Identities = 167/214 (78%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCAT-C 210961 || || ||||| |||||| ||||||| |||||||| || || | ||||| | |||| | Sbjct 2645494 AGCACCAGGTGCAGAGTG-ACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATTC 2645436 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGA-GGAACTCCTTCCTTGT 211020 |||||||||||||| |||||||| || | || |||||||| || | |||||||||| Sbjct 2645435 CTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGC-GGTCAGGAAGGGATCCCTTCCTTGT 2645377 Query 211021 CCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCG 211080 |||||||||| ||| || || |||||||||||| | ||||| |||||||||| | Sbjct 2645376 CCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACTCCGAGAGTGATGG 2645317 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| || || || ||||| ||||| | |||||| Sbjct 2645316 TCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645283 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| ||||| | ||||| | || || Sbjct 2644585 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGCCCGTCC 2644526 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||| || |||| || || |||||| Sbjct 2644525 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGAAAGCCCTCTTTGTCC 2644466 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || ||||||||| | || ||||| || ||||| ||| Sbjct 2644465 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 2644406 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | |||||| || Sbjct 2644405 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2644371 Score = 158 bits (174), Expect = 3e-33 Identities = 162/209 (78%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 || |||| ||||| |||||||| |||||||| || || | ||||| | || ||||||| Sbjct 2644809 CAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCA 2644750 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 |||||||||| |||||||| | | || |||||||| |||| || ||||||||||||| Sbjct 2644749 GCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGA 2644690 Query 211027 TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTC 211086 |||| ||| || || |||||||||||| | || ||||| || ||||| ||||| | Sbjct 2644689 TCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT-GTCTTAC 2644631 Query 211087 CCGTGAGAGTCTTTACAAACA-CCTGCAT 211114 | || || ||||| ||||| | | ||||| Sbjct 2644630 CAGTCAGGGTCTTCACAAAGATCTTGCAT 2644602 Score = 158 bits (174), Expect = 3e-33 Identities = 157/201 (78%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 210914 AAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTT 210973 ||| ||||| || || |||||||| || || | ||||| | || |||||||||||||| Sbjct 2645029 AAGGGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTT 2644971 Query 210974 GCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTG 211033 ||| || ||||| || | || ||||||||||||| |||||||||||||||||||| Sbjct 2644970 GCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTGGC 2644911 Query 211034 TTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 ||||| || |||| ||||||| | || ||||| |||||||| ||||| || || || Sbjct 2644910 CTTCACATTCTCGA-GGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAG 2644852 Query 211094 AGTCTTTACAAACACCTGCAT 211114 ||||| ||||| | |||||| Sbjct 2644851 GGTCTTCACAAAGATCTGCAT 2644831 Score = 150 bits (166), Expect = 4e-31 Identities = 163/214 (76%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAA--TCCGCAAGGGTCCTTCCAT 210960 || || ||||| || ||||| || || |||||||| | | || | ||||| | |||| Sbjct 2645723 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGACCAT 2645664 Query 210961 CTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGT 211020 | |||||||||||||| || ||||| || | || ||||| || |||| || ||||||| Sbjct 2645663 CCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGT 2645604 Query 211021 CCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCG 211080 |||||||||| |||||||| |||||||||||| | | ||||| |||||||| | Sbjct 2645603 CCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGCTCACACCTCCAGAGTGAT-G 2645545 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| || || || ||||| ||||| | |||||| Sbjct 2645544 TCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645511 Score = 132 bits (146), Expect = 1e-25 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 2645267 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 2645208 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| ||||| ||||| || | || ||||| || |||| || | ||||||| Sbjct 2645207 TCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCT-CTTGTCC 2645149 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | ||| || || || ||||| || Sbjct 2645148 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTG-GTTCGACTTCCAGGGTGATGGTT 2645090 Query 211083 TTT-CCCGTGAGAGTCTTTACAAA-CACCTGCAT 211114 ||| || || || ||||| ||||| | |||||| Sbjct 2645089 TTTGCCAGTCAGGGTCTTCACAAAGAATCTGCAT 2645056 >seq408 Length=880842 Score = 147 bits (162), Expect = 5e-30 Identities = 164/216 (76%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCA-AGGGTCCTTCCATC 210961 || || ||||| || || || || || |||||||| || || | | ||||| | ||||| Sbjct 118337 AGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAGAGGGTACGGCCATC 118396 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||||| ||||| ||||| ||||| || | || ||||||||||| | ||||||||||| Sbjct 118397 TTCCAG-TGCTT-CCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 118454 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||||||| ||| || || || ||||||||| | || ||||| || ||||| || Sbjct 118455 TTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 118514 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || || ||||| || || | ||||||||| Sbjct 118515 CTTGCCAGTCAGGGTCTTGACGAAMATCTGCATTTT 118550 Score = 132 bits (146), Expect = 1e-25 Identities = 147/191 (77%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||| | | ||||| || || | ||||| | |||||||||||||||||||||||||||| Sbjct 117910 CTTCTGGAATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCGAAGA 117969 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | || | ||||||||||| | |||||||||||||||||||| || || || | Sbjct 117970 TCA-GCCTCTCTGGTCAGGAGG-ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 118027 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT-CCCGTGAGAGTCTTTACA 211103 | ||||||||| | || ||||| || ||||| |||||| || || || ||||| ||| Sbjct 118028 CAATGGTGTCACTGGGCTCGACCTCAAG-GTGATGGTCTTTGCCAGTCAGGGTCTTGACA 118086 Query 211104 AACACCTGCAT 211114 || | |||||| Sbjct 118087 AAGATCTGCAT 118097 Score = 129 bits (142), Expect = 1e-24 Identities = 162/214 (76%), Gaps = 9/214 (4%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || |||||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 118114 AGCACAAG-TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 118172 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAG-GCGTTGTTGGTCAGGAGGA-ACTCCTTCCTTGT 211020 ||||| ||||||||| |||||| || || || |||||||||||| | || ||||||| Sbjct 118173 TCCAG-TGCTTGCCT--GAAGATCAGCGCTCTGCTGGTCAGGAGGAGATGCCCTCCTTGT 118229 Query 211021 CCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCG 211080 | |||||| || | || || || || ||||||||| | | | ||| | ||||| | Sbjct 118230 CTTGGATC-TTGGCTTGACATTCTCAATGGTGTCACTGGCTCGA--CTCCAAGGTGATGG 118286 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| || || || ||||| ||||| | |||||| Sbjct 118287 TCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 118320 >seq81 Length=318634 Score = 109 bits (120), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 || ||||| || | |||||||| ||||| || | || |||||| | | | || || Sbjct 153228 ACCAAGTCCCAGCCCCAGGTGAAGGGTGGATTCCTGTTAGATGTTGCAGTTGGACAGTGT 153287 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||| ||||||||||| || || | ||| || | || || || ||||| | || Sbjct 153288 GTGTCCATCCTCCAGCTGCTTCCCAGCAAWGATCAGCTGCTGCTGATCTGGAGGGATACC 153347 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| |||||||||||| || || ||||| | || ||||| |||||||| ||| Sbjct 153348 CTCCTTATCCTGGATCTTTGCTTCTACATTTTCTGTAGTATCAGAAGGTTCAACCTTGAG 153407 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTT 211099 |||| || || |||||||| || || Sbjct 153408 GTTGATGGTTTTCCCCGTGAGGGTRTT 153434 >seq26 Length=874857 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||||||||| ||||||||| |||||||||||| | || |||||| Sbjct 551908 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 551967 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || |||||||| || || || || | |||||| || Sbjct 551968 AGGGTGATGGTTTTGCCCGTGAGGGTTTTCACGAAGATCTGCATCTT 552014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159076330919675