Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq290 116 9e-21 seq2412 109 1e-18 seq408 104 6e-17 seq81 89.7 1e-12 >seq290 Length=3199669 Score = 116 bits (128), Expect = 9e-21 Identities = 134/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 225514 AGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTC 225573 || |||||||| || |||| || || || | || || | ||| ||||| |||||||| Sbjct 2645028 AGGGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTG 2644970 Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| ||||| || | || ||||| || ||||| ||||||||||| |||||||| | Sbjct 2644969 CCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCC 2644910 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691 |||||| |||| |||||| || ||||| || | ||||| |||||||| |||| Sbjct 2644909 TTCACATTCTCGA-GGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCA 2644853 Score = 116 bits (128), Expect = 9e-21 Identities = 143/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAA--TCGGCCAAAGTTCTCCCA 225558 ||| || ||||| || |||||||| || |||| |||| | || | || || | ||| Sbjct 2645724 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGACCA 2645665 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 || || |||||||| ||||| ||||| || | || |||||||| ||||| || |||||| Sbjct 2645664 TCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTG 2645605 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 || |||||||| |||||| ||||||||||| || | ||| || | ||||| Sbjct 2645604 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGCTCACACCTCCAGAGTGAT- 2645546 Query 225679 GTCTTGCCCGTCA 225691 |||||||| |||| Sbjct 2645545 GTCTTGCCAGTCA 2645533 Score = 114 bits (126), Expect = 3e-20 Identities = 143/192 (74%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| ||||| |||| || || | ||||| Sbjct 2645268 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 2645209 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||||||||| || ||||| || | || ||||| || ||||| || | |||||| Sbjct 2645208 TTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCT-CTTGTC 2645150 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG- 225679 |||||||| ||||||| || |||||||| || ||| || || | ||||| | Sbjct 2645149 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGG-TTCGACTTCCAGGGTGATGGT 2645091 Query 225680 TCTTGCCCGTCA 225691 | ||||| |||| Sbjct 2645090 TTTTGCCAGTCA 2645079 Score = 113 bits (124), Expect = 1e-19 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 || |||| ||||| || ||||| |||| ||||| || | | || | ||| ||||| | Sbjct 2644809 CAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCA 2644750 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| ||||||||||| | | || ||||| || ||||| || |||||||| |||| Sbjct 2644749 GCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGA 2644690 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| || ||| ||||||||||| || ||||| || | ||||| ||||| | Sbjct 2644689 TCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT-GTCTTAC 2644631 Query 225686 CCGTCAAAGTTTTTATGAACA-CTTGCAT 225713 | |||| || || | || | ||||||| Sbjct 2644630 CAGTCAGGGTCTTCACAAAGATCTTGCAT 2644602 Score = 95.1 bits (104), Expect = 3e-14 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCAT- 225559 ||| || ||||| |||||| | ||||| |||| ||||| || | | || | ||||| Sbjct 2645495 CAGCACCAGGTGCAGAGTG-ACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATT 2645437 Query 225560 CTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGC-GGAATACCTTCCTTG 225618 | || |||||||| ||||||||||| || | || |||| || || || ||||||||| Sbjct 2645436 CCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGC-GGTCAGGAAGGGATCCCTTCCTTG 2645378 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 || |||||||| || ||| ||||||||||| || || || | | ||||| Sbjct 2645377 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACTCCGAGAGTGATG 2645318 Query 225679 GTCTTGCCCGTCA 225691 |||||||| |||| Sbjct 2645317 GTCTTGCCAGTCA 2645305 >seq2412 Length=22636 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | |||||||| | | || || ||||| || || || || ||||| | ||||| Sbjct 228 CCAAGTCTACAACGTAGTCGTCACAGCCCATGCTTTCGTAATAATCTTCTTCATAGTTAT 287 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || |||||||| ||| | || ||| |||| ||||| || ||||| Sbjct 288 ACCAATTATAATCGGAGGATTCGGAAACTGACTAGTCCCTCTAATAATTGGAGCCCCTGA 347 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || || || ||| | | ||||||||||| || ||| |||| || || ||||| |||| Sbjct 348 CATAGCATTCCCACGAATAAACAATATAAGCTTCTGACTACTCCCCCCATCCTTCCTTCT 407 >seq408 Length=880842 Score = 104 bits (114), Expect = 6e-17 Identities = 160/225 (71%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || ||||| || |||| ||||| || | | | | Sbjct 118328 CGCAGGCGCAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAGAGGGT 118387 Query 225553 -CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||||| || ||||| || | || ||||| || || || || Sbjct 118388 ACGGCCATCTTCCAG-TGCTTCCT-GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCC 118445 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| || ||| || |||||||| || || || || | Sbjct 118446 TTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAG 118505 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||||||| |||| || || | ||| | |||||||| Sbjct 118506 GGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAMATCTGCATTTT 118550 Score = 100 bits (110), Expect = 7e-16 Identities = 144/193 (75%), Gaps = 9/193 (5%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || |||||||||||||| |||| ||||| || | || || | ||||| Sbjct 118113 CAGCACAAG-TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 118171 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAG-TCGTTGTTGGTCGGGCGGA-ATACCTTCCTTG 225618 ||| || ||||| || |||||| || | || ||||| || ||| || || |||||| Sbjct 118172 TTCCAG-TGCTTGCC--TGAAGATCAGCGCTCTGCTGGTCAGGAGGAGATGCCCTCCTTG 118228 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 ||||||||| || |||| ||| || |||||||| || || || || || ||||| Sbjct 118229 TCTTGGATC-TTGGCTTGACATTCTCAATGGTGTCACTGG-CTCGAC-TCCAAGGTGATG 118285 Query 225679 GTCTTGCCCGTCA 225691 |||||||| |||| Sbjct 118286 GTCTTGCCAGTCA 118298 >seq81 Length=318634 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 || ||||| ||| | ||||| || |||||||| | || || ||| | | || || || Sbjct 153228 ACCAAGTCCCAGCCCCAGGTGAAGGGTGGATTCCTGTTAGATGTTGCAGTTGGACAGTGT 153287 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||||| || |||||||||||||| | ||| || | || || || || || ||||| Sbjct 153288 GTGTCCATCCTCCAGCTGCTTCCCAGCAAWGATCAGCTGCTGCTGATCTGGAGGGATACC 153347 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||| || |||||| |||||||| ||| ||| | || || || | ||| || | | Sbjct 153348 CTCCTTATCCTGGATC-TTTGCTTCTACATTTTCTGTAGTATCAGAAGGTTCAACCTTGA 153406 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 |||| || || ||||| | || || ||| Sbjct 153407 GGTTGATGGTTTTCCCCGTGAGGGTRTTCATG 153438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192453351935930