Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq113 122 6e-23 >seq113 Length=61408302 Score = 122 bits (134), Expect = 6e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 ||||| ||||| || || |||||||| ||||| || || |||||||| || ||||| || Sbjct 20011624 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 20011683 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || |||||||| ||||| || || || | || |||| Sbjct 20011684 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 20011743 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || ||||| || | ||| ||||||||||| | |||||| ||| Sbjct 20011744 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGG 20011788 Score = 120 bits (132), Expect = 2e-22 Identities = 140/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| ||||||||||| ||||| || ||||| ||||||| || Sbjct 20015219 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 20015278 Query 27549 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 ||||| || || ||||| ||| ||| ||| |||| || || | ||| || || || | Sbjct 20015279 ACCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGGGACCCATTAGCAT 20015337 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 27667 |||| ||||| || || || | ||||||||||||| ||||| || || || || || | Sbjct 20015338 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 20015395 Query 27668 ACAG 27671 |||| Sbjct 20015396 ACAG 20015399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369484255334945