Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq319 111 2e-19 seq113 102 1e-16 >seq319 Length=32890058 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | ||| |||||||| ||||| |||||||||| ||| | || || Sbjct 31275672 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 31275613 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||||||||| || ||||| ||||| || || || Sbjct 31275612 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCC 31275553 Query 46774 ACAA 46777 |||| Sbjct 31275552 ACAA 31275549 Score = 91.5 bits (100), Expect = 2e-13 Identities = 81/100 (81%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 46319 CTTGTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTT 46378 |||| ||||| |||||||| | || ||||||||||| || ||||| || ||||| || | Sbjct 31276907 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCT 31276849 Query 46379 TGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||||||| || || |||||||| || ||||| ||||| Sbjct 31276848 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 31276809 >seq113 Length=61408302 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || | |||||||| || || | ||| || Sbjct 43800316 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 43800257 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || || Sbjct 43800256 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCRACTGCAGCAAAGGCA 43800197 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 43800196 ACCACTCTCTCACC 43800183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712888994990400