Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq113 82.4 3e-11 >seq113 Length=61408302 Score = 82.4 bits (90), Expect = 3e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| ||| |||| |||||| | || | ||| |||||||| || || ||| | | || Sbjct 20011784 ATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTT-CTAAATGGTGAATTGTC 20011726 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | |||||| |||||| |||||| | || || || ||||| |||||||| Sbjct 20011725 TTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCAG 20011666 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 |||||| |||| || | ||||||| Sbjct 20011665 CTATTCACTGCTCACATACATGATTGC 20011639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190084498597950