Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq408 123 6e-23 seq290 113 1e-19 >seq408 Length=880842 Score = 123 bits (136), Expect = 6e-23 Identities = 165/225 (73%), Gaps = 11/225 (5%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT-CTCCCATC 151951 || || || || || ||||| || || ||||||||||| || | | | | | ||||| Sbjct 118337 AGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAGAGGGTACGGCCATC 118396 Query 151952 TTCTAG-GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||| || |||| || || ||||| |||||||||||||| | | ||| |||||||| | Sbjct 118397 TTCCAGTGCTT---CCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGT 118453 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067 |||| || || ||||||| |||| | | |||| ||| ||| || ||||| || | Sbjct 118454 CTTGGATCTTGGCTTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGA 118510 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCT 152112 | || ||||| || || ||||| ||||| | ||||||||| |||| Sbjct 118511 TGGTCTTGCCAGTCAGGGTCTTGACGAAMATCTGCATTTTTCCCT 118555 Score = 104 bits (114), Expect = 5e-17 Identities = 164/226 (73%), Gaps = 13/226 (6%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || ||||| || ||||| || ||||| ||||||||||| || | | || Sbjct 118104 CCTGAGGCGCAGCACAAG-TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGT 118162 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGC-CTCTGCTGGTC-CGCCGAGATT 152000 | |||||||| || || || |||||| ||| ||||||||||| | ||||| Sbjct 118163 ACGGCCATCTTCCAGTGCTTGCC---TGAAGATCAGCGCTCTGCTGGTCAGGAGGAGATG 118219 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT--CTCTACTT 152058 || ||||| ||||| | | || | |||||| |||| | | |||| ||| ||| ||| Sbjct 118220 CCCTCCTTGTCTTGGA-TCTTGGCTTGACATTCTCAATGGTGTC---ACTGGCTCGACTC 118275 Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || || ||||| || || ||||| || |||| |||||| Sbjct 118276 CAAG-GTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 118320 >seq290 Length=3199669 Score = 113 bits (124), Expect = 1e-19 Identities = 165/227 (73%), Gaps = 10/227 (4%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || ||||| |||||||| ||||||||||| || | | || Sbjct 2645504 CCTGAGGCGCAGCACCAGGTGCAGAGT-GACTCTTTCTGGATGTTGTAGTCAGAGAGGGT 2645446 Query 151943 TCTCCCA-TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTC-CGCCGAGATT 152000 | |||| || || || || || |||||||| ||||||||| |||| | | ||| Sbjct 2645445 GCGCCCATTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGC-GGTCAGGAAGGGATC 2645387 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACT 152057 |||||||| || || || || ||||||| |||| | | |||| ||| ||| ||| Sbjct 2645386 CCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCAACT 2645330 Query 152058 TCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || || ||||| || || |||||||| |||| |||||| Sbjct 2645329 CCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645283 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/227 (71%), Gaps = 9/227 (4%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGA-TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAG 151941 |||||| | || || || || ||||| |||||||| ||||||||||| || | | | Sbjct 2644824 CCTGAGGCGCAGCACCAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGG 2644765 Query 151942 TTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | | ||| ||||| || || || |||||||| | |||||||||||| | | || | Sbjct 2644764 TGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGC 2644705 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTT 152058 | ||||| || || || || ||||||| |||| | | |||| ||| ||| || | Sbjct 2644704 CCTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCT 2644648 Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGA-CCTGCAT 152104 | || || || || || || || || |||||||| |||| | ||||| Sbjct 2644647 CCAGGGTGAT-GTCTTACCAGTCAGGGTCTTCACAAAGATCTTGCAT 2644602 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/225 (70%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || ||| || || || || |||||||| || || | | || Sbjct 2645050 CCTGAGGCGTAGCACCAGTGCAAGGGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGT 2644992 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||| ||||| || || || || ||||| |||||||||||||| | | || || Sbjct 2644991 GCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCC 2644932 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || ||| |||| | | |||| ||| ||| || || Sbjct 2644931 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGA-GGTGTC---ACTGGGCTCCACCTC 2644876 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| || || |||||||| |||| |||||| Sbjct 2644875 CAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2644831 Score = 87.8 bits (96), Expect = 4e-12 Identities = 157/224 (70%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || || || || ||||||||||| |||| | || | |||||| Sbjct 2645267 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 2645208 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| || ||||| |||||||||||||| | | || || | ||| || Sbjct 2645207 TCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCT-CTTGTCC 2645149 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT--CTCTACTTCAAGAGTAATAG 152070 || || || || ||| |||| | | |||| ||| || ||||| || || || | Sbjct 2645148 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGTTCGACTTCCAGGGTGATGG 2645092 Query 152071 -TTTTGCCCGTGAGAGTCTTCACGAAG-ACCTGCATTTTACCCT 152112 ||||||| || || |||||||| ||| | |||||| ||||| Sbjct 2645091 TTTTTGCCAGTCAGGGTCTTCACAAAGAATCTGCATGCCACCCT 2645048 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || || || || |||||||||||||| | | || | ||| || Sbjct 2644585 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGCCCGTCC 2644526 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | | || || || || Sbjct 2644525 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGAAAGCCCTCTTTGTCC 2644466 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || ||||| || || Sbjct 2644465 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCAAGGGTGATG 2644409 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| |||| |||||| || Sbjct 2644408 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2644371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153745478938745