Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq408 150 4e-31 seq290 143 6e-29 seq81 107 4e-18 seq3599 93.3 9e-14 seq3094 89.7 1e-12 seq1671 89.7 1e-12 seq399 89.7 1e-12 >seq408 Length=880842 Score = 150 bits (166), Expect = 4e-31 Identities = 174/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | || ||| || |||||||||||||||| | Sbjct 118323 CCACC-CGCAGGCGCAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAA 118381 Query 282933 -AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || ||| || || |||||||||| | || |||||| || Sbjct 118382 GAGGGTACGGCCATCTTCCAGTGCTT--CCTGCAAAGATCAGCCTCTGCTGGTCAGGAGG 118439 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||||||||| ||||| || | || || ||||| | ||||| Sbjct 118440 GATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 118499 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| ||||| || |||| ||||| ||||| ||||||||||| Sbjct 118500 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAMATCTGCATTTT 118550 Score = 114 bits (126), Expect = 3e-20 Identities = 168/229 (73%), Gaps = 9/229 (4%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||| || || || || | ||| |||||| |||||||||||||||| Sbjct 118099 CCACCCCTGAGGCGCAGCACAAG-TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 118157 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCA-AACGTTGTTGGTCACCCGG 282991 || || |||||||| || ||| || || | ||||||| | || |||||| || Sbjct 118158 AGGGTACGGCCATCTTCCAGTGCTTGCCTG---AAGATCAGCGCTCTGCTGGTCAGGAGG 118214 Query 282992 A-ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || |||||||||||||||||||| || || || | || || ||||| || |||| Sbjct 118215 AGATGCCCTCCTTGTCTTGGATCTTGGC-TTGACATTCTCAATGGTGTCACTGGC-TCGA 118272 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || ||||| ||||| || |||| ||||| || || |||||||| Sbjct 118273 CTCCAAG-GTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 118320 Score = 98.7 bits (108), Expect = 2e-15 Identities = 165/230 (72%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGT-ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||||| |||||||| || ||||| || | || | ||| | | ||||||||||||| Sbjct 117874 ACCACCCCGCAGGCGCAGGCACCAGGTGCA--GTAGTC-CTTCTGGAATGTTGTAGTCAG 117930 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || || |||||||| || || || || || || |||||| | | | |||||| | Sbjct 117931 ACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCGAAGATC-AGCCTCTCTGGTCAGGAG 117989 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || || |||||||| |||||||| || || || | || || ||||| | |||| Sbjct 117990 G-ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGA 118048 Query 283051 CTTCGAGAGTGATCGTC-TTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| ||| || || |||| ||||| || || |||||||| Sbjct 118049 CCTCAAG-GTGATGGTCTTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 118097 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 121418 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 121360 >seq290 Length=3199669 Score = 143 bits (158), Expect = 6e-29 Identities = 165/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGT--AGTCAGCAAGCGTGC 282939 ||||| || ||||| || | ||| ||| || |||||||||| |||||| || |||| Sbjct 2645729 AGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGC 2645670 Query 282940 GGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCT 282999 | |||||||| || || || || |||||||||| | || ||||| ||||| |||| Sbjct 2645669 GACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCT 2645610 Query 283000 CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAG 283059 ||||||| |||||||| || || ||| | ||||| ||||| ||| || || |||| Sbjct 2645609 CCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGCTCACACCTCCAGAG 2645550 Query 283060 TGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||||| || |||| ||||| || || |||||||| Sbjct 2645549 TGAT-GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645511 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || ||||| || | ||| ||| || ||||||||||| |||| Sbjct 2644600 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 2644541 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || || |||||||||| | || ||||| ||| Sbjct 2644540 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 2644481 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 | ||||| ||||| |||||||| || || ||| | || || ||||| | || || Sbjct 2644480 AAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 2644421 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| ||||| || |||| ||||| || || |||||||| || Sbjct 2644420 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2644371 Score = 132 bits (146), Expect = 1e-25 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| |||||||||||||||| || ||||| || || || || || || || || ||| Sbjct 2644792 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAG 2644733 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || |||||| ||||| ||||||||||| |||||||| ||||| || | Sbjct 2644732 ATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTC 2644673 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| | || || || || ||||| |||||||| |||| ||||| || Sbjct 2644672 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT-GTCTTACCAGTCAGGGTCTTCACA 2644614 Query 283089 AATATC-TGCAT 283099 || ||| ||||| Sbjct 2644613 AAGATCTTGCAT 2644602 Score = 129 bits (142), Expect = 1e-24 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||| || ||||| || | ||| | |||| |||||||||||||||| Sbjct 2645509 CCACCCCTGAGGCGCAGCACCAGGTGCAGAGTGACT-CTTTCTGGATGTTGTAGTCAGAG 2645451 Query 282933 AGCGTGCGGCCA-TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA-CCCG 282990 || ||||| ||| ||||| || || || || || ||||||| | || ||||| | Sbjct 2645450 AGGGTGCGCCCATTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTG-CGGTCAGGAAG 2645392 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || || |||||||| |||||||| ||||| || | ||||| ||||| | || | Sbjct 2645391 GGATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAA 2645332 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||||| ||||| || |||| ||||| || || |||||||| Sbjct 2645331 CTCCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645283 Score = 122 bits (134), Expect = 2e-22 Identities = 167/228 (73%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 282874 CACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAA 282933 |||| | ||| || || ||||| || | ||| ||| || |||||||||||||| | | Sbjct 2645281 CACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACA 2645222 Query 282934 GCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAA 282993 | ||||| ||||| || || || ||||| |||||||||| | || ||||| |||| Sbjct 2645221 GGGTGCGACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAA 2645162 Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 | |||| |||||| |||||||| || || || | || || |||| | | |||||||| Sbjct 2645161 TGCCCT-CTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGT-CACTGGTTCGACTT 2645104 Query 283054 CGAGAGTGATCG-TCTTACCCGTCAAAGTCTTAACGAA-TATCTGCAT 283099 | || ||||| | | || || |||| ||||| || || |||||||| Sbjct 2645103 CCAGGGTGATGGTTTTTGCCAGTCAGGGTCTTCACAAAGAATCTGCAT 2645056 >seq81 Length=318634 Score = 107 bits (118), Expect = 4e-18 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||| || | || |||| || | ||| ||| | || ||||||| ||| | Sbjct 153222 ACCACCACCAAGTCCCAGCCCCAGGTGAAGGGTGGATTCCTGTTAGATGTTGCAGTTGGA 153281 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||| | |||||||| || || ||||| |||| ||||| | || || || || Sbjct 153282 CAGTGTGTGTCCATCCTCCAGCTGCTTCCCAGCAAWGATCAGCTGCTGCTGATCTGGAGG 153341 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || ||||||||||||| ||| | || |||| || |||| ||| || Sbjct 153342 GATACCCTCCTTATCCTGGATCTTTGCTTCTACATTTTCTGTAGTATCAGAAGGTTCAAC 153401 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 | ||| |||| || || ||||| | || || | | | |||||| Sbjct 153402 CTTGAGGTTGATGGTTTTCCCCGTGAGGGTRTTCATGGAGATCTGC 153447 >seq3599 Length=1371849 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 875813 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 875871 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 870731 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 870673 >seq3094 Length=7953 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 2673 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 2615 >seq1671 Length=622465 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 585702 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 585760 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 585940 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 585882 >seq399 Length=34323315 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 846357 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 846299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046670869192130