Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq290 149 5e-31 seq81 113 3e-20 seq408 96.9 2e-15 >seq290 Length=3199669 Score = 149 bits (164), Expect = 5e-31 Identities = 178/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||||||| | || ||||||||| || ||| ||||| ||||||||||| Sbjct 2644607 TTGCATGCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTA 2644548 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | || |||| |||| ||||||||||| || |||||||||| | |||||| || Sbjct 2644547 ATCAGACAGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTC 2644488 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | || || || ||| ||||| ||||| |||| | |||||||| || Sbjct 2644487 GGGGGGAAAGCCCTCTTTGTCCTGGATCTTGGCCTTCAC-GTTCTCAATGGTGTCACTGG 2644429 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||||||| | || || ||||| || || ||||||||||| ||||| |||||| || Sbjct 2644428 GCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 2644370 Score = 127 bits (140), Expect = 1e-24 Identities = 173/235 (74%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGG-TGAAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165 ||| || || || || | || ||||||| || || || ||| || ||||||||||| | Sbjct 2644833 CATGCCACCCCTGAGGCGCAGCACCAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGT 2644774 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | ||| |||| |||| ||||||||||| || || |||||||| | |||||| || | Sbjct 2644773 CAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAG 2644714 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | || ||||| ||| ||||| |||| | ||| | |||||||| || Sbjct 2644713 GGGGAATGCCCTCCTTGTCCTGGATCTT-GGCTTTGACATTCTCGATGGTGTCACTGGGC 2644655 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGAT-TTGCATG 44338 |||||||||| || || ||||| || || ||||||||||| ||||| ||||||| Sbjct 2644654 TCCACCTCCAGGGTGAT-GTCTTACCAGTCAGGGTCTTCACAAAGATCTTGCATG 2644601 Score = 120 bits (132), Expect = 2e-22 Identities = 166/227 (73%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 44114 CCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGT 44173 |||||||| | || ||||||||| || ||| ||||| ||||||||||| |||| || Sbjct 2645279 CCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGG 2645220 Query 44174 TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACA 44233 ||| | || |||||||||||||| |||||||||| | |||||| |||| || | Sbjct 2645219 GTGCGACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATG 2645160 Query 44234 CCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCC 44293 || | ||| ||| ||||| ||||| | | |||||||| | | ||| || ||| Sbjct 2645159 CCCT-CTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC-ACTGGTTCGACTTCC 2645102 Query 44294 ACCGTAATCGTCTTT-CCCGTGAGGGTCTTCACGAAG-ATTTGCATG 44338 | || || || ||| || || ||||||||||| ||| || |||||| Sbjct 2645101 AGGGTGATGGTTTTTGCCAGTCAGGGTCTTCACAAAGAATCTGCATG 2645055 Score = 120 bits (132), Expect = 2e-22 Identities = 168/231 (73%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAA--TCGG 44168 ||||| || || | || ||||||||| || ||| ||||| |||||||||| | || | Sbjct 2645738 CCCCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAG 2645679 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 || ||| | || ||||||||||| || |||||||||| | |||||| || | | Sbjct 2645678 ACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGG 2645619 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 | | || ||||| ||| ||||| |||| | |||| | |||||||| || | | Sbjct 2645618 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGCTCAC 2645560 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| || || ||||| || || ||||||||||| ||||| |||||| Sbjct 2645559 ACCTCCAGAGTGAT-GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2645510 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||| ||| ||| ||||| |||||||| || || | || |||| |||| || Sbjct 2645038 CACCAGTGCAAGGGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTC 2644980 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || |||||||||| | |||||| || | ||| | |||||||| ||| Sbjct 2644979 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTG 2644920 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | ||| |||||| || |||||||||| || || ||||| Sbjct 2644919 GATCTTGGCCTTC-ACATTCTCGAGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTT 2644861 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || ||||||||||| ||||| |||||| Sbjct 2644860 GCCAGTCAGGGTCTTCACAAAGATCTGCATG 2644830 Score = 105 bits (116), Expect = 5e-18 Identities = 167/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || ||||||||| || ||| ||| || ||||||||||| || Sbjct 2645513 CATGCCACCCCTGAGGCGCAGCACCAGGTGCAGAGTGA-CTCTTTCTGGATGTTGTAGTC 2645455 Query 44167 GGCGAGTTGGCGCTCGT-CGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | ||| |||| | | | ||||||||||| || || ||||||| | |||| | | Sbjct 2645454 AGAGAGGGTGCGCCCATTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCGGTCAGG 2645395 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 |||| | |||||||| ||| ||||| |||| | ||| | |||||||| || Sbjct 2645394 AAGGGATCCCTTCCTTGTCCTGGATCTTG-GCTTTGACATTCTCGATGGTGTCACTGGGC 2645336 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 2645335 TCAACTCCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2645282 >seq81 Length=318634 Score = 113 bits (124), Expect = 3e-20 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||| || | |||||||||| ||| |||| || ||||||| | | || ||| | | Sbjct 153232 AGTCCCAGCCCCAGGTGAAGGGTGGATTCCTGTTAGATGTTGCAGTTGGACAGTGTGTGT 153291 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || |||||||||||||| |||| ||||| |||||||||||| ||| | ||| ||| Sbjct 153292 CCATCCTCCAGCTGCTTCCCAGCAAWGATCAGCTGCTGCTGATCTGGAGGGATACCCTCC 153351 Query 44240 TTTTCCGTTATCTTCTGCTTC-AATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 || ||| ||||| |||||| | || || | || || | | ||| |||| | | Sbjct 153352 TTATCCTGGATCTT-TGCTTCTACATTTTCTGTAGTATCAGAAGGTTCAACCTTGAGGTT 153410 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || || ||||||||||| |||| | |||| ||| || || Sbjct 153411 GATGGTTTTCCCCGTGAGGGTRTTCATGGAGATCTGCGTGGTG 153453 >seq408 Length=880842 Score = 96.9 bits (106), Expect = 2e-15 Identities = 165/233 (71%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| ||| | | ||| | || ||||||||| || || ||||| ||||||||||| || Sbjct 118318 CATCCCCACCCGCAGGCGCAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTC 118377 Query 44167 -GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | ||| || | || ||||| ||||| || |||||||||| | |||||| || | Sbjct 118378 AGAAGAGGGTACGGCCATCTTCCAG-TGCTT-CCTGCAAAGATCAGCCTCTGCTGGTCAG 118435 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 ||| | |||||||| || ||||| |||| | ||| | |||||||| || Sbjct 118436 GAGGGATGCCTTCCTTGTCTTGGATCTT-GGCTTTGACATTCTCAATGGTGTCACTGGGC 118494 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | || || ||||| || || |||||||| ||||| || ||||| Sbjct 118495 TCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAMATCTGCAT 118547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359968046283615