Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq454 203 5e-47 seq78 111 2e-19 >seq454 Length=20063581 Score = 203 bits (224), Expect = 5e-47 Identities = 223/297 (75%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| |||| || ||||| ||||| |||||| | |||| || ||| | | || Sbjct 19788243 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 19788302 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||||||| |||| ||||| | || |||||||||||||||||||||||| | |||| Sbjct 19788303 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 19788362 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| |||| || || || |||||||| || ||||| | ||| | ||| Sbjct 19788363 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGGGCCCCAATCTCCACCATGG 19788422 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || |||||||| ||| |||||||| ||||||| | || | ||||||||||| Sbjct 19788423 TCTCCCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 19788482 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| ||| ||||| || || || || || || ||||| |||||||||| Sbjct 19788483 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 19788539 Score = 140 bits (154), Expect = 5e-28 Identities = 183/254 (72%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | ||||| || | |||||||| || |||||||| ||| || || || Sbjct 19790158 TCACCGATGAGAATGAGCCGGGCAGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGC 19790217 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 | || || || || ||||| || | |||||| || | |||||||| |||||||||||| Sbjct 19790218 TGGTGCTTGAGCACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATC 19790277 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||||| || ||||| || || |||| || || || | | |||| || |||||| Sbjct 19790278 ATGAGCCCCGGCACCAGCCCGAACACCTCCTGCCCCACRGAGAAGCGCAGGTGCTCGGGC 19790337 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | ||| || || | ||| | |||| ||| |||| || || ||||||||| Sbjct 19790338 ACGTGGGGTGGGTACAGCATCTCTGCCTGTGTGTCCCGCACCGTCGGAGGGTACATTTCA 19790397 Query 9472 CCGTCAATCATCTG 9485 || || |||||||| Sbjct 19790398 CCATCGATCATCTG 19790411 >seq78 Length=4401391 Score = 111 bits (122), Expect = 2e-19 Identities = 202/297 (68%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 ||||||| | |||| ||| ||| |||||| || || || || | | ||| Sbjct 3359562 GGAACGCCACYTACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCCAGGGATGCCG 3359503 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| |||||| | || || | |||| || || || ||||| ||||||||| | |||| Sbjct 3359502 TCTTCACGATCTCAAAGCCAGTGGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 3359443 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | || || || ||||| || ||||| || | ||| | |||| Sbjct 3359442 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 3359383 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || ||| | ||||| | || || |||| || || || | ||| | ||||| Sbjct 3359382 TTTCCCCAAAAATGCCATTGGGTTGYGGTTTCTCCAGCAGCAAGCCTGGGTAAAACTCCA 3359323 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||| || | |||||| || || | || || || || |||| | ||||||| Sbjct 3359322 GAGCATCAATGTCTCCATACAGRTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCCTG 3359266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716831143908800