Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq290 129 1e-24 seq26 104 6e-17 >seq290 Length=3199669 Score = 129 bits (142), Expect = 1e-24 Identities = 150/199 (75%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACA 177984 || || ||||| || || || || || || |||||||| |||||||| || ||| ||| Sbjct 2644609 ATCTTTGTGAAGACCCTGACTGGTAAGAC-ATCACCCTGGAGGTGGA--GCCCAGTGACA 2644665 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||||||||| |||||| ||||| |||||||| || || || || || |||||||| Sbjct 2644666 CCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGA 2644725 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 | | |||||||| || || ||||| ||||| || | || || | || || ||| ||| Sbjct 2644726 GGTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAACATCC 2644785 Query 178105 AAAAAGAATCAACACTGCA 178123 | ||||| ||||| ||||| Sbjct 2644786 AGAAAGAGTCAACTCTGCA 2644804 Score = 123 bits (136), Expect = 6e-23 Identities = 170/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || || ||||| || || || || || || |||||||| |||| Sbjct 2644366 AGGTCAACATGC---AGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGG 2644422 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||| |||||||| || ||||| ||||||||||| || | Sbjct 2644423 TGGA--GCCCAGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCTT 2644480 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| || || || ||||| || || || | || || Sbjct 2644481 TCCCCCCGACCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGGCGCACCCT 2644540 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | ||||| ||| |||| || ||||| || ||||| || || || | || ||| Sbjct 2644541 GTCTGATTACAACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGA 2644595 Score = 114 bits (126), Expect = 3e-20 Identities = 163/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| |||| || || || ||| Sbjct 2645286 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGGAGTTGA--GCCCAGTG 2645343 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC-TCCGGACCAG 178040 ||||||||||||| |||||| ||||| |||||||| ||||| ||||| ||| |||| | Sbjct 2645344 ACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTTCCTGACC-G 2645402 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAG-ATGGAAGGACTCTTGCCGATTATAA 178099 || | || |||||||| || || ||||| || | |||| | || || | || || || Sbjct 2645403 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGAATGGGCGCACCCTCTCTGACTACAA 2645462 Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | |||| ||||| || || ||||| || || || | ||||| Sbjct 2645463 CATCCAGAAAGAGTC-ACTCTGCACCTGGTGCTGCGCCTCAG 2645503 Score = 107 bits (118), Expect = 5e-18 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || |||||| | | ||| Sbjct 2645514 CAGATCTTTGTGAAGACCCTGACTGGCAAGAC-ATCACTCTGGAGGTGTGAGCCAGTGAC 2645572 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| |||||||| || || || || || |||||||| Sbjct 2645573 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 2645632 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA--TTATAACG 178101 | || ||||| || || || ||||| || ||||| | || || | || | | ||| Sbjct 2645633 AGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTTAACAACA 2645692 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| || ||||| || || || | ||||| Sbjct 2645693 TCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAG 2645732 >seq26 Length=874857 Score = 104 bits (114), Expect = 6e-17 Identities = 86/103 (83%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| ||||| || ||||| ||||||||||||||||| || || | Sbjct 552008 CAGATCTTCGTGAAAACCCTCACGGGCAAAACCATCACCCTCGAGGTGGA--GCCCAATG 551951 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||||||||||| ||| ||||| |||||||| ||||| Sbjct 551950 ACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 551908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203652620803430