Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq290 141 9e-29 seq408 82.4 7e-11 >seq290 Length=3199669 Score = 141 bits (156), Expect = 9e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| |||||||| ||||| || || || ||||||||| Sbjct 2644591 AGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGC 2644532 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||||||||| || || ||||| | ||| ||||| | ||||| || ||| Sbjct 2644531 CCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGAAAGCCCTCT 2644472 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| || | ||||||||| | || Sbjct 2644471 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTG 2644412 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| || || ||||||||||| Sbjct 2644411 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2644371 Score = 134 bits (148), Expect = 1e-26 Identities = 167/222 (75%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGA-TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCG 41703 || || | |||||| ||||| || ||| ||||| ||||| ||||| ||||||||||| Sbjct 2644820 AGGCGCAGCACCAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCG 2644761 Query 41704 CTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTC 41763 | |||| || ||||||||||| ||||| |||| | ||| ||||| | ||||| || ||| Sbjct 2644760 CCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTC 2644701 Query 41764 CTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCG 41822 ||||||| || | || |||| || | | ||||| || | ||||||||||| | Sbjct 2644700 CTTGTCC-TGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGG 2644642 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATC-TGCATG 41863 | || || ||||| ||||| ||||| || || ||| |||||| Sbjct 2644641 TGAT-GTCTTACCAGTCAGGGTCTTCACAAAGATCTTGCATG 2644601 Score = 125 bits (138), Expect = 7e-24 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCA-GCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCG 41703 || |||| |||||| |||| | ||| |||||||| ||||| ||||| || |||||||| Sbjct 2645046 AGGCGTAGCACCAG-TGCAAGGGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCG 2644989 Query 41704 CTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTC 41763 | |||| || ||||||||||| || || ||||| | ||| ||||| | |||| | || Sbjct 2644988 CCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTC 2644929 Query 41764 CTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 ||||||| ||| || |||| || | ||||| || | ||||||||||| || Sbjct 2644928 CTTGTCCTGGATCTTGGCCTTC-ACATTCTCGAGGTGTCACTGGGCTCCACCTCCAGAGT 2644870 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 2644869 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2644830 Score = 122 bits (134), Expect = 8e-23 Identities = 171/235 (73%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT--AG 41689 || ||| || | || || | |||||| ||||| ||| |||||||| ||||| | || Sbjct 2645742 ACAGCCCCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAG 2645683 Query 41690 TCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC 41749 || || |||||||| | || || ||||||||||| || || ||||| | ||| ||||| Sbjct 2645682 TCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCG 2645623 Query 41750 GCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC 41809 | ||||| || |||||||||| ||| || ||||| | | ||||| || | | Sbjct 2645622 GGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACT-GGC 2645564 Query 41810 TC-CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||||||| || || || || || ||||| ||||| || || ||||||||| Sbjct 2645563 TCACACCTCCAGAGTGAT-GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2645510 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/223 (72%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| ||| ||||| ||||| ||||| |||||||||||| Sbjct 2645500 AGGCGCAGCACCAGGTGCAGAGTGA-CTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGC 2645442 Query 41705 TC-GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG--CGGGAACGCTC 41761 | || || ||||||||||| ||||| ||||| | ||| |||| | |||| | || Sbjct 2645441 CCATTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTG-CGGTCAGGAAGGGATCCCT- 2645384 Query 41762 TCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCAC 41820 ||||||||| || | || |||| || | | ||||| || | ||| || | | Sbjct 2645383 TCCTTGTCC-TGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACTCCGAG 2645325 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || ||||| ||||| || || ||||||||| Sbjct 2645324 AGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2645282 >seq408 Length=880842 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/193 (72%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 41672 TCCTTCTG-AATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 |||||||| |||||| ||||| || ||||| || | || || ||||||||||| ||||| Sbjct 117908 TCCTTCTGGAATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCGAA 117967 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 ||||| | || ||||| | | | | || ||||||||| ||| || ||| | Sbjct 117968 GATCAGCCTCT-CTGGTCAG-GAGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 118025 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT-TTTACCCGTCAGCGTCTTTA 41849 | | ||||| || | ||| |||| || || || || ||| || ||||| ||||| | Sbjct 118026 CTCAATGGTGTCACTGGGCTCGACCT-CAAGGTGATGGTCTTTGCCAGTCAGGGTCTTGA 118084 Query 41850 CGAAAATCTGCAT 41862 | || |||||||| Sbjct 118085 CAAAGATCTGCAT 118097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462274557014000