Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq6903 109 4e-19 seq562 89.7 4e-13 >seq6903 Length=6360297 Score = 109 bits (120), Expect = 4e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || ||||||| || | |||||||||| |||||||||| || ||||||||||| Sbjct 1349327 CTTGAGCTCTCTGCTGAGCACGATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGG 1349268 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| || ||||| || || |||||||| |||| | |||||||||| ||| Sbjct 1349267 AATGGAAAACCAGGTTTTCTTACCCATTATCAGTGCATTCTGTTTACCTG 1349218 >seq562 Length=6874971 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || || ||||||||||| || ||||| | |||||| | ||| || | Sbjct 2705260 CTTTGTATTCTGCCCCAAAGTGCCTCCACTGGAAACCATAAATAGGTCCCAAATCCCCCT 2705201 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||| | | ||||| | ||||| | || | || ||||| |||||||||| Sbjct 2705200 CTTCTCTTTTGCAGAAACCCTGCTTATCCAGGAACTCACGTGACCCATTGGCATCCCAAA 2705141 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | |||||| ||| || || |||||| Sbjct 2705140 TCTTCACGCCCTTTGCAGAGAGTTCTTTG 2705112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361220754990665