Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1728 114 2e-20 seq1573 111 2e-19 seq860 102 1e-16 >seq1728 Length=2076782 Score = 114 bits (126), Expect = 2e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423 Query 24277 CAA 24279 ||| Sbjct 1517422 CAA 1517420 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 24522 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 24581 |||||||| || ||||| ||||||||||||||||| |||| ||||| ||||| ||| Sbjct 1512665 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCCAGAACATGAGAGATAAAGTAT 1512606 Query 24582 TTTTCGTCTGGTGTTAGTTTATTCCA 24607 ||||| |||| | |||| || ||||| Sbjct 1512605 TTTTCATCTGCTTTTAGCTTGTTCCA 1512580 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 ||||| | |||||||| |||||||||| |||||||| || |||||||||||||| || Sbjct 1514982 CTGTCTTCAATCCACTTCAGAGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTTTCA 1514923 Query 24363 ATAGCATTAAA 24373 ||||||||||| Sbjct 1514922 ATAGCATTAAA 1514912 >seq1573 Length=591436 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 537420 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 537479 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| || || |||||||| ||||||||||| |||||||| ||||| ||||| | Sbjct 537480 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 537539 Query 24277 C 24277 | Sbjct 537540 C 537540 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| ||||| ||||| | |||||| |||||||||||||| || ||||| ||||| Sbjct 539619 ATCTTTAATGTATGTGTCAATAAGAAGACTGTACATTTCCGAATGTATATTTTCCATGGC 539678 Query 24455 CATTTGAAATCCGTAGAAACA 24475 || || || || |||||||| Sbjct 539679 AATCTGGAAGCCATAGAAACA 539699 >seq860 Length=330425 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||| | ||| || || || ||||| || || || | Sbjct 187347 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATTCTCGCTGCCAGGA 187406 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || || |||| ||||| ||| || || |||| || | ||| || |||| Sbjct 187407 TAGCATAGTCAGGGTGTTTGGTAGTCAGAGTCGCAGCCGTTTCAGCAGCCAGCGTATCCA 187466 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || ||||| || ||| | |||| || || || |||||||| Sbjct 187467 GTTCCACTGTTGTGACACCACTGTATAGCCCCTGAATTACCTTCAT 187512 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 ||||||| || || ||||||| || || || |||||||| || || || || ||||| | Sbjct 176506 CATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCAT 176565 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 |||||||||| || || || | || || | | || || || | || ||||| || | Sbjct 176566 AATAAATGGTCTCAAAAATTTGCTGGTTCAAGTGCTGGGCCTCAGGACTTTCAAAGGGGT 176625 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | | || || || ||||| | ||||| |||||||| || || || | ||| | Sbjct 176626 ACCTCATCAAGATGAAAGCATCTGCCAGGCCTTGCACACCAATGCCAATGGGACGATGGC 176685 Query 53568 TCTTATTAGAGATTTCAGC 53586 | || ||| |||||| Sbjct 176686 GTCTGTTGGAGCGTTCAGC 176704 Score = 82.4 bits (90), Expect = 9e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||| ||||| ||||||||||| ||||| || || | || || ||||||| || || Sbjct 180369 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 180428 Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || || || |||||||| |||||| || || || | | ||| || ||||||| || Sbjct 180429 TCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCAAAAATGTCCAAATGCCATGG 180487 Query 54148 TTCCAAGTATATGG 54161 || | ||| |||| Sbjct 180488 CTCAAGGTAGATGG 180501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593670280189200