Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1728 102 8e-17 seq1573 89.7 5e-13 >seq1728 Length=2076782 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || || || ||||| || |||| || || Sbjct 1517540 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 1517481 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 1517480 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGGCA 1517421 Query 16379 ACCAATCGCTCACC 16392 |||| | |||||| Sbjct 1517420 ACCACCCTCTCACC 1517407 Score = 102 bits (112), Expect = 8e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || ||||| || || | | || |||||| | | || Sbjct 1522063 AAAAATCTGCATCCAGAGTGAAAACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 1522004 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 |||| || ||| | ||| ||||||||||||||||||||||| | |||||||| |||| Sbjct 1522003 GATACTCCGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCA 1521944 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | |||||||||||||||| || Sbjct 1521943 TGAAATCAAAAGGATTTTCTG 1521923 >seq1573 Length=591436 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || ||||| || || || ||||||| ||||| ||| || Sbjct 537422 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 537481 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | |||||||| ||||||||||| || ||||| ||||| ||||| || Sbjct 537482 AGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 537541 Query 16379 AC 16380 || Sbjct 537542 AC 537543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462472021619000