Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1682 383 1e-101 seq1434 84.2 2e-11 >seq1682 Length=19375980 Score = 383 bits (424), Expect = 1e-101 Identities = 614/880 (70%), Gaps = 4/880 (0%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTC 107687 ||||| ||| | || | ||||| ||||||||||| || ||||||| ||||| Sbjct 16300606 TACCTGAACCTGACGAAGGACTGCAGCCGCTTCAAGGCGACGCGGCAGTTCATCGAGTTC 16300665 Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || ||||| | || ||| || |||||||| |||||||| ||||| |||| || || Sbjct 16300666 CCGCTGAGCCAGGAGGAGGCCGAGTTCCCCATCGCCTACTCCATGGTCATCCACGACAAA 16300725 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || || | || || |||| ||||| || | |||||||| |||||| | ||||| ||| Sbjct 16300726 ATCGAGATGTTCGAGAGGCTCCTGCGGTCCATCTATGCCCCCCAGAACCTCTACTGCGTC 16300785 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 ||| |||| |||||||||| | ||| | ||||| || ||||| | ||||| Sbjct 16300786 CACATGGACAGCAAGTCCCCAGCCTCCTTCCAGGAGGCTGTGCGAGCCATCGCTGCCTGC 16300845 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 |||||||| ||||| ||||||| ||| ||||| || |||||||||||| | Sbjct 16300846 TTCCCCAACGTCTTTGTGGCCAGCCGCCTGGAGAACGTGGTCTACGCCTCCTGGTCCCGG 16300905 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTAC 107987 |||| ||||| |||||||||||| | ||| |||||||||| | ||||| ||| ||| Sbjct 16300906 CTGCAGGCTGATCTGAACTGTATGCAGGACCTGCTCCAGAGTCCGGTGCCCTGGCGCTAC 16300965 Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047 | || || || ||||| || ||||||||||| |||||||| |||||||| |||| || Sbjct 16300966 CTCCTCAACACTTGCGGCACCGACTTCCCCATTAAGACCAACGCCGAGATCGTCCGCACC 16301025 Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaa 108107 || ||| || || |||| |||||| || || || ||| || || | ||| | Sbjct 16301026 CTGAAGGTGCTGCAGGGGCGGAACAGCATCGAATCGGAGAGGCCCTCAGCCCTCAAGCAG 16301085 Query 108108 aaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAG 108167 | || ||| |||| | | | |||||| | | | || || | || | ||| Sbjct 16301086 GAGCGGTGGCGGTACCACCACAAAGTGACACAGTTCATCTTCCGGACGACCACGCAGAAA 16301145 Query 108168 GACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGA 108227 || || || || | | ||||||||||| || || || || | |||||| | || Sbjct 16301146 GAGCCGCCGCCACACGGCTCCCCCATGTTCACGGGCAACGCGTACATCGTGGCCACGCGG 16301205 Query 108228 GCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAA 108287 |||||||| | || ||||| | | ||| | || | | || |||| ||| Sbjct 16301206 GCCTTTGTGGAGCACGTCTTCCAGAGCCCCACGGTGCAGCAGTTCCTCGAGTGGGCCAAG 16301265 Query 108288 GACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGGATGC 108345 |||||||| ||||||||||| ||| ||||||||||||| | || ||| | ||| ||| Sbjct 16301266 GACACCTACAGCCCCGACGAGCACGTCTGGGCCACCCTCAACCGCATGCCCGGTG--TGC 16301323 Query 108346 CTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 108405 | || |||| || | || ||||| | |||| ||||||| ||||| ||| | | Sbjct 16301324 CGGGGGCTGTGCCGCACAACGACAAGTTCGAGCTCTCGGACATGAACGCCATGGCCCGCC 16301383 Query 108406 TCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCT 108465 | |||||||||||||||| ||||| || ||||| ||| ||||| || |||||||| Sbjct 16301384 TGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCGCCCTACCCACCCTGCA 16301443 Query 108466 CTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGG 108505 |||| | || | | | ||| ||||| | ||||| ||||| Sbjct 16301444 CTGGCCTGCACCAGCGCGCCGTCTGCGTCTACGGCGCCGG 16301483 >seq1434 Length=7059826 Score = 84.2 bits (92), Expect = 2e-11 Identities = 214/322 (66%), Gaps = 8/322 (2%) Strand=Plus/Minus Query 107711 CTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCT 107770 ||||||| | |||||| ||| | || || || |||| | ||| || ||||| | Sbjct 2118155 CTTCCCCGTCGCCTACATCATGACCCTGCACAAGGAGTTTGAGACCTTCGAGCGGCTCTT 2118096 Query 107771 GCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCA 107828 | || ||||| |||||| | ||| | ||||| ||||||||||| |||| | || Sbjct 2118095 CAGGGCGGTGTACATGCCCC--AAAACGTCTACTGCGTCCACGTGGACCAGAAGGCGCCG 2118038 Query 107829 GAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCC 107888 | | || || ||||||| || | | | |||||||||||| | ||| | ||| Sbjct 2118037 GCCGCCTTTAAGCAGGCGGTGCAGCGCCTGGTGGGCTGCTTCCCCAACGCTTTCCTCGCC 2117978 Query 107889 AGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGT 107948 | | ||| | |||||| || | | ||| | ||| || ||||| || || Sbjct 2117977 TCCAGGATGGAGCGGGTGGTCTACGGCGGGATATCCCGCCTGCGGGCCGACCTCAATTGC 2117918 Query 107949 ATGGAAGACTTGCT--CCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGA 108006 ||| |||| |||| || | | ||||| ||||||||| | || || || |||||| Sbjct 2117917 ATGAGAGACCTGCTGGCCTCTG--CCGTGCCCTGGAAGTACCTGCTCAACACCTGCGGGC 2117860 Query 108007 CAGACTTCCCCATAAAGACCAA 108028 ||||||||| | |||||||| Sbjct 2117859 AGGACTTCCCCTTGAAGACCAA 2117838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348239449102710