Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq551 89.7 4e-13
seq1011 87.8 1e-12
>seq551
Length=8489217
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 18121 TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATT 18180
|||| || || || || || || ||||||||||||| || || | |||||||| |
Sbjct 2124000 TGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCT 2124059
Query 18181 GTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTT 18240
| ||||| ||| |||| || || || || || || | ||||||||| || || |
Sbjct 2124060 GCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCT 2124119
Query 18241 GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300
||| || | ||| ||||||| |||||| || | ||||||| | || || |
Sbjct 2124120 TGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCCCTG 2124179
Query 18301 TCAATGTTTTTACAAAAATTTGCATTTTT 18329
|||| || || ||||| || |||||||||
Sbjct 2124180 TCAAGGTCTTCACAAAGATCTGCATTTTT 2124208
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || || || || ||||||||||||| || || | ||||
Sbjct 2123537 AGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 2123596
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || || | ||||||||| ||
Sbjct 2123597 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 2123656
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | ||| || | ||| ||||||| |||||| || | ||||||| |
Sbjct 2123657 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 2123716
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| |||| || || ||||| || |||||
Sbjct 2123717 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123748
Score = 82.4 bits (90), Expect = 6e-11
Identities = 158/232 (68%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 18094 GTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153
|||| || |||| || | || || | ||| || || || || || || ||||||||||
Sbjct 2123290 GTTA-CCACCCCTCAGGCGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGT 2123348
Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213
||| || || | |||||||| || ||||| ||| |||| || || || || ||
Sbjct 2123349 CGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG 2123408
Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273
|| | ||||||||| || || | ||| || | ||| ||||||| |||||
Sbjct 2123409 GAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCT 2123468
Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| || | ||||||| | ||||| |||| || || ||||| || |||||
Sbjct 2123469 CAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123520
>seq1011
Length=3435084
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| || | ||| || || || || || || ||||||||||| | || || | ||||
Sbjct 2734633 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2734692
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || ||| | ||||||||| ||
Sbjct 2734693 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 2734752
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | ||| ||||||| |||||| || | ||||||| |
Sbjct 2734753 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 2734812
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331
||||| |||| || || ||||| || ||||| || ||
Sbjct 2734813 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAA 2734850
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| || | ||| || || || || || || ||||||||||| | || || | ||||
Sbjct 2733949 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2734008
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || ||| | ||||||||| ||
Sbjct 2734009 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 2734068
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | ||| ||||||| |||||| || | ||||||| |
Sbjct 2734069 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 2734128
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| |||| || || ||||| || |||||
Sbjct 2734129 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734160
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| || | ||| || || || || || || ||||||||||| | || || | ||||
Sbjct 2734177 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2734236
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || ||| | ||||||||| ||
Sbjct 2734237 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 2734296
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | ||| ||||||| |||||| || | ||||||| |
Sbjct 2734297 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 2734356
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| |||| || || ||||| || |||||
Sbjct 2734357 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734388
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| || | ||| || || || || || || ||||||||||| | || || | ||||
Sbjct 2734405 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2734464
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || ||| | ||||||||| ||
Sbjct 2734465 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 2734524
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | ||| ||||||| |||||| || | ||||||| |
Sbjct 2734525 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 2734584
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| |||| || || ||||| || |||||
Sbjct 2734585 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379312030191675
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |