Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 100 3e-16
seq551 100 3e-16
seq1728 84.2 2e-11
>seq1011
Length=3435084
Score = 100 bits (110), Expect = 3e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|||||||| || || || ||||| ||||| ||||| || |||||| | || ||||| ||
Sbjct 2734847 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCC 2734788
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|||| | || | ||||| | || ||||||||||||| | || ||||||
Sbjct 2734787 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGAC 2734728
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||| | || || || |||||||| ||| ||||||| || || || ||
Sbjct 2734727 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 2734668
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||| || || || || || || || || || || | |||||||| ||
Sbjct 2734667 AACATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGG 2734618
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||| ||||| || |||||| | || ||||| ||
Sbjct 2734161 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 2734102
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| | || ||||||||||||| | || ||||||||
Sbjct 2734101 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCA 2734042
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || |||||||| ||| ||||||| || || || || ||
Sbjct 2734041 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 2733982
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || || || || || || || || | |||||||| ||
Sbjct 2733981 CATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGG 2733934
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||| ||||| || |||||| | || ||||| ||
Sbjct 2734389 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 2734330
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| | || ||||||||||||| | || ||||||||
Sbjct 2734329 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCA 2734270
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || |||||||| ||| ||||||| || || || || ||
Sbjct 2734269 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 2734210
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || || || || || || || || | |||||||| ||
Sbjct 2734209 CATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGG 2734162
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||| ||||| || |||||| | || ||||| ||
Sbjct 2734617 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 2734558
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| | || ||||||||||||| | || ||||||||
Sbjct 2734557 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCA 2734498
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || |||||||| ||| ||||||| || || || || ||
Sbjct 2734497 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 2734438
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || || || || || || || || | |||||||| ||
Sbjct 2734437 CATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGG 2734390
>seq551
Length=8489217
Score = 100 bits (110), Expect = 3e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||| ||||| || |||||| | || ||||| ||
Sbjct 2123521 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 2123462
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || || | || ||||||||||||| | || || |||||
Sbjct 2123461 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 2123402
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || |||||||| ||| ||||||| || || ||| || ||
Sbjct 2123401 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 2123342
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || || || ||||| || || || || | |||||||| ||||
Sbjct 2123341 CATCCAGAAGGAGTCCACTCTGCACCTTGTGCTGCGCCTGAGGGGTGGTA 2123292
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||| ||||| || |||||| | || ||||| ||
Sbjct 2123749 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 2123690
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || || | || ||||||||||||| | || || |||||
Sbjct 2123689 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 2123630
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || |||||||| ||| ||||||| || || ||| || ||
Sbjct 2123629 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 2123570
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || || ||||| || |||| || | |||||||| ||
Sbjct 2123569 CATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGCCTGAGGGGTGG 2123522
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||| ||||| || |||||| | || ||||| ||
Sbjct 2123977 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 2123918
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || || | || ||||||||||||| | || || |||||
Sbjct 2123917 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 2123858
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || |||||||| ||| ||||||| || || ||| || ||
Sbjct 2123857 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAA 2123798
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || || ||||| || || || || | |||||||| ||
Sbjct 2123797 CATCCAGAAGGAGTCCACTCTGCACCTTGTGCTGCGCCTGAGGGGTGG 2123750
Score = 82.4 bits (90), Expect = 7e-11
Identities = 143/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
|||| ||||| || || || ||||| ||||||| || || |||||| | || ||||| |
Sbjct 2124209 CAAAAATGCAGATCTTTGTGAAGACCTTGACAGGGAAGACCATCACCCTGGAGGTTGAGC 2124150
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| |||| | || | || || | || ||||||||||||| | || || |
Sbjct 2124149 CCAGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTG 2124090
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||| | || || || |||||||| ||| ||||||| || || ||| |
Sbjct 2124089 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACT 2124030
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCA 31395
| ||||| || || || || ||||| ||
Sbjct 2124029 ACAACATCCAGAAGGAGTCCACTCTGCA 2124002
>seq1728
Length=2076782
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 57969 GAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCA 58028
|||||| | | || || || || || ||||| || ||||||||||| |||||| ||
Sbjct 1517410 GAGAGGGTGGTTGCCTTTGCTGCAGTTGAAGGGATCTTCTTTTCGGGTTCCTTTGCTGCT 1517469
Query 58029 ATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072
||||||||| ||||||| | ||||||||||| || ||||| ||
Sbjct 1517470 ATATTTTGGCTGAAGAAGAGAGGCCTGATGCCTGGACTGACTTT 1517513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445727869066800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |