Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1728 120 4e-22 seq1573 111 2e-19 seq860 89.7 6e-13 seq922 84.2 3e-11 >seq1728 Length=2076782 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | ||||| || Sbjct 1517422 CAACCACCCTCTCACC 1517407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 |||||||| || ||||||||||||||||||||||| |||| ||||| ||||| ||| Sbjct 1512665 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCCAGAACATGAGAGATAAAGTAT 1512606 Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| |||| | |||| || ||||| Sbjct 1512605 TTTTCATCTGCTTTTAGCTTGTTCCA 1512580 >seq1573 Length=591436 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| |||||||| |||||||| ||||||| || | || | Sbjct 537420 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 537479 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || ||||| || ||||||||||||||||| ||||| ||||| | Sbjct 537480 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 537539 Query 33724 C 33724 | Sbjct 537540 C 537540 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || |||||||| ||||| || || || || || || || ||| Sbjct 536124 GACATGACTCCCATCCTCTGATATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCT 536183 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || ||||||||||| ||||| ||||| Sbjct 536184 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 536218 >seq860 Length=330425 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 ||||||| ||||| ||||||| || || || |||| ||| || || || || ||||| | Sbjct 176506 CATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCAT 176565 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 |||||||||| ||||| || | || || | | || || || || || ||||| || | Sbjct 176566 AATAAATGGTCTCAAAAATTTGCTGGTTCAAGTGCTGGGCCTCAGGACTTTCAAAGGGGT 176625 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | | || || || || || | ||||| |||||||| || || || | ||| | Sbjct 176626 ACCTCATCAAGATGAAAGCATCTGCCAGGCCTTGCACACCAATGCCAATGGGACGATGGC 176685 Query 62806 TCTTATTAGAGATTTCAGC 62824 | || ||| |||||| Sbjct 176686 GTCTGTTGGAGCGTTCAGC 176704 >seq922 Length=2438970 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 188495 TTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGCT 188554 |||||||||| ||||| | ||||| || || | |||||||| ||||| |||| Sbjct 1257057 TTCTATGATGTATCCATCGTCTTCCAAGCCTTTATTCTTACTACTGCTGTGTTCCTTGGA 1257116 Query 188555 CTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG--ATTGT 188612 |||||| ||| ||| | |||||||||||||| ||||| ||| ||| | |||| || || Sbjct 1257117 CTGACTGCATATACCTTGCAATCAAAGAGAGACTTCAGCAAATTTGGAGCAGGGTATGGT 1257176 Query 188613 TTGCTGCTTT 188622 || || ||| Sbjct 1257177 TTTTTGTTTT 1257186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629763160141200