Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1728 120 4e-22
seq1573 111 2e-19
seq860 89.7 6e-13
seq922 84.2 3e-11
>seq1728
Length=2076782
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| |
Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||||||||| | ||| || || || ||||||||||| ||||| |||||||||||||
Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423
Query 33724 CAATAAGTCTCTCTCC 33739
||| | ||||| ||
Sbjct 1517422 CAACCACCCTCTCACC 1517407
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028
|||||||| || ||||||||||||||||||||||| |||| ||||| ||||| |||
Sbjct 1512665 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCCAGAACATGAGAGATAAAGTAT 1512606
Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCA 34054
||||| |||| | |||| || |||||
Sbjct 1512605 TTTTCATCTGCTTTTAGCTTGTTCCA 1512580
>seq1573
Length=591436
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| || || | ||| |||||||| |||||||| ||||||| || | || |
Sbjct 537420 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 537479
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| |||||||| || || || ||||| || ||||||||||||||||| ||||| ||||| |
Sbjct 537480 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 537539
Query 33724 C 33724
|
Sbjct 537540 C 537540
Score = 82.4 bits (90), Expect = 1e-10
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335
||||| |||||||| | || |||||||| ||||| || || || || || || || |||
Sbjct 536124 GACATGACTCCCATCCTCTGATATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCT 536183
Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370
|||| || || ||||||||||| ||||| |||||
Sbjct 536184 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 536218
>seq860
Length=330425
Score = 89.7 bits (98), Expect = 6e-13
Identities = 139/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685
||||||| ||||| ||||||| || || || |||| ||| || || || || ||||| |
Sbjct 176506 CATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCAT 176565
Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745
|||||||||| ||||| || | || || | | || || || || || ||||| || |
Sbjct 176566 AATAAATGGTCTCAAAAATTTGCTGGTTCAAGTGCTGGGCCTCAGGACTTTCAAAGGGGT 176625
Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805
| | | | || || || || || | ||||| |||||||| || || || | ||| |
Sbjct 176626 ACCTCATCAAGATGAAAGCATCTGCCAGGCCTTGCACACCAATGCCAATGGGACGATGGC 176685
Query 62806 TCTTATTAGAGATTTCAGC 62824
| || ||| ||||||
Sbjct 176686 GTCTGTTGGAGCGTTCAGC 176704
>seq922
Length=2438970
Score = 84.2 bits (92), Expect = 3e-11
Identities = 97/130 (75%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 188495 TTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGCT 188554
|||||||||| ||||| | ||||| || || | |||||||| ||||| ||||
Sbjct 1257057 TTCTATGATGTATCCATCGTCTTCCAAGCCTTTATTCTTACTACTGCTGTGTTCCTTGGA 1257116
Query 188555 CTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG--ATTGT 188612
|||||| ||| ||| | |||||||||||||| ||||| ||| ||| | |||| || ||
Sbjct 1257117 CTGACTGCATATACCTTGCAATCAAAGAGAGACTTCAGCAAATTTGGAGCAGGGTATGGT 1257176
Query 188613 TTGCTGCTTT 188622
|| || |||
Sbjct 1257177 TTTTTGTTTT 1257186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629763160141200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |