Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1728 114 2e-20 seq922 113 6e-20 seq1573 111 2e-19 seq860 102 1e-16 >seq1728 Length=2076782 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | ||||| || Sbjct 1517422 CAACCACCCTCTCACC 1517407 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 ||||| | |||||||| |||||||||| |||||||| || |||||||||||||| || Sbjct 1514982 CTGTCTTCAATCCACTTCAGAGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTTTCA 1514923 Query 36386 ATAGCATTAAA 36396 ||||||||||| Sbjct 1514922 ATAGCATTAAA 1514912 >seq922 Length=2438970 Score = 113 bits (124), Expect = 6e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 |||||| |||||| || | || | | | | |||||| ||||||||||||||||| || Sbjct 1258460 TTATTTTTTATTAAATGCCTCTAGTAAACGCAGCAGATGTAAGAACAGATTGATGATGTC 1258401 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 || ||| | |||||| | || || | || |||||||| || | || || || || | Sbjct 1258400 CAGGTAAAGATTGATTGCAGCCAATATGTACTCTTCAGGGGATAATTTGTGCATCAGCAA 1258341 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| Sbjct 1258340 ATGAGTGTCATAAATAATAAATCCACAGAACAGAAGCGCTCCAGCAGCAGCAAACACCAA 1258281 Query 9407 CTCCACTGTTTCACT 9421 ||| | ||| ||||| Sbjct 1258280 CTCTATTGTCTCACT 1258266 Score = 105 bits (116), Expect = 9e-18 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 9470 AACAAACAAT--CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCA 9527 || |||| || |||||||||| ||| ||||| |||||||||||||| | ||||||||| Sbjct 1257181 AAAAAACCATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTTGATTGCAAGGTATATGCA 1257122 Query 9528 GTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCA 9587 ||||| |||| ||||| |||||||| || || || ||||| | |||| |||||| Sbjct 1257121 GTCAGTCCAAGGAACACAGCAGTAGTAAGAATAAAGGCTTGGAAGACGATGGATACATCA 1257062 Query 9588 TAGAA 9592 ||||| Sbjct 1257061 TAGAA 1257057 >seq1573 Length=591436 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 537420 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 537479 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || |||||||| ||||||||||| |||||||| ||||| ||||| | Sbjct 537480 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 537539 Query 36300 C 36300 | Sbjct 537540 C 537540 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| ||||| ||||| | |||||| |||||||||||||| || ||||| ||||| Sbjct 539619 ATCTTTAATGTATGTGTCAATAAGAAGACTGTACATTTCCGAATGTATATTTTCCATGGC 539678 Query 36478 CATTTGAAATCCGTAGAAACA 36498 || || || || |||||||| Sbjct 539679 AATCTGGAAGCCATAGAAACA 539699 >seq860 Length=330425 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| | ||| || || || ||||| || || | | Sbjct 187347 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATTCTCGCTGCCAGGA 187406 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || || |||| ||||| ||| || || |||| || ||||| || |||| Sbjct 187407 TAGCATAGTCAGGGTGTTTGGTAGTCAGAGTCGCAGCCGTTTCAGCAGCCAGCGTATCCA 187466 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || ||||| || ||| | |||| || || || |||||||| Sbjct 187467 GTTCCACTGTTGTGACACCACTGTATAGCCCCTGAATTACCTTCAT 187512 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 ||||||| || || ||||||| || || || |||||||| || || || || ||||| | Sbjct 176506 CATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCAT 176565 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 |||||||||| || || || | || || | | || || || | || ||||| || | Sbjct 176566 AATAAATGGTCTCAAAAATTTGCTGGTTCAAGTGCTGGGCCTCAGGACTTTCAAAGGGGT 176625 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | | || || || ||||| | ||||| |||||||| || || || | ||| | Sbjct 176626 ACCTCATCAAGATGAAAGCATCTGCCAGGCCTTGCACACCAATGCCAATGGGACGATGGC 176685 Query 65599 TCTTATTAGAGATTTCAGC 65617 | || ||| |||||| Sbjct 176686 GTCTGTTGGAGCGTTCAGC 176704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658115909188600