Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1728 114 2e-20
seq922 113 6e-20
seq1573 111 2e-19
seq860 102 1e-16
>seq1728
Length=2076782
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| | ||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423
Query 36300 CAATAAGTCTCTCTCC 36315
||| | ||||| ||
Sbjct 1517422 CAACCACCCTCTCACC 1517407
Score = 84.2 bits (92), Expect = 3e-11
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385
||||| | |||||||| |||||||||| |||||||| || |||||||||||||| ||
Sbjct 1514982 CTGTCTTCAATCCACTTCAGAGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTTTCA 1514923
Query 36386 ATAGCATTAAA 36396
|||||||||||
Sbjct 1514922 ATAGCATTAAA 1514912
>seq922
Length=2438970
Score = 113 bits (124), Expect = 6e-20
Identities = 142/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286
|||||| |||||| || | || | | | | |||||| ||||||||||||||||| ||
Sbjct 1258460 TTATTTTTTATTAAATGCCTCTAGTAAACGCAGCAGATGTAAGAACAGATTGATGATGTC 1258401
Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346
|| ||| | |||||| | || || | || |||||||| || | || || || || |
Sbjct 1258400 CAGGTAAAGATTGATTGCAGCCAATATGTACTCTTCAGGGGATAATTTGTGCATCAGCAA 1258341
Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406
|| |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | ||||
Sbjct 1258340 ATGAGTGTCATAAATAATAAATCCACAGAACAGAAGCGCTCCAGCAGCAGCAAACACCAA 1258281
Query 9407 CTCCACTGTTTCACT 9421
||| | ||| |||||
Sbjct 1258280 CTCTATTGTCTCACT 1258266
Score = 105 bits (116), Expect = 9e-18
Identities = 99/125 (79%), Gaps = 2/125 (2%)
Strand=Plus/Minus
Query 9470 AACAAACAAT--CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCA 9527
|| |||| || |||||||||| ||| ||||| |||||||||||||| | |||||||||
Sbjct 1257181 AAAAAACCATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTTGATTGCAAGGTATATGCA 1257122
Query 9528 GTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCA 9587
||||| |||| ||||| |||||||| || || || ||||| | |||| ||||||
Sbjct 1257121 GTCAGTCCAAGGAACACAGCAGTAGTAAGAATAAAGGCTTGGAAGACGATGGATACATCA 1257062
Query 9588 TAGAA 9592
|||||
Sbjct 1257061 TAGAA 1257057
>seq1573
Length=591436
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| || || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 537420 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 537479
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| |||||||| || || |||||||| ||||||||||| |||||||| ||||| ||||| |
Sbjct 537480 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 537539
Query 36300 C 36300
|
Sbjct 537540 C 537540
Score = 84.2 bits (92), Expect = 3e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||||| ||||| ||||| | |||||| |||||||||||||| || ||||| |||||
Sbjct 539619 ATCTTTAATGTATGTGTCAATAAGAAGACTGTACATTTCCGAATGTATATTTTCCATGGC 539678
Query 36478 CATTTGAAATCCGTAGAAACA 36498
|| || || || ||||||||
Sbjct 539679 AATCTGGAAGCCATAGAAACA 539699
>seq860
Length=330425
Score = 102 bits (112), Expect = 1e-16
Identities = 122/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| |||| ||| || ||||||||||| | ||| || || || ||||| || || | |
Sbjct 187347 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATTCTCGCTGCCAGGA 187406
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
| ||||| || || |||| ||||| ||| || || |||| || ||||| || ||||
Sbjct 187407 TAGCATAGTCAGGGTGTTTGGTAGTCAGAGTCGCAGCCGTTTCAGCAGCCAGCGTATCCA 187466
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| || ||||| || ||| | |||| || || || ||||||||
Sbjct 187467 GTTCCACTGTTGTGACACCACTGTATAGCCCCTGAATTACCTTCAT 187512
Score = 84.2 bits (92), Expect = 3e-11
Identities = 138/199 (69%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478
||||||| || || ||||||| || || || |||||||| || || || || ||||| |
Sbjct 176506 CATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCAT 176565
Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538
|||||||||| || || || | || || | | || || || | || ||||| || |
Sbjct 176566 AATAAATGGTCTCAAAAATTTGCTGGTTCAAGTGCTGGGCCTCAGGACTTTCAAAGGGGT 176625
Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598
| | | | || || || ||||| | ||||| |||||||| || || || | ||| |
Sbjct 176626 ACCTCATCAAGATGAAAGCATCTGCCAGGCCTTGCACACCAATGCCAATGGGACGATGGC 176685
Query 65599 TCTTATTAGAGATTTCAGC 65617
| || ||| ||||||
Sbjct 176686 GTCTGTTGGAGCGTTCAGC 176704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658115909188600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |