Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1728 129 8e-25
seq1573 120 4e-22
seq860 87.8 3e-12
>seq1728
Length=2076782
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||||||||| | ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423
Query 50102 CAACAAGTCTCTCTCC 50117
|||| | ||||| ||
Sbjct 1517422 CAACCACCCTCTCACC 1517407
>seq1573
Length=591436
Score = 120 bits (132), Expect = 4e-22
Identities = 101/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| || || ||||| || ||||| |||||||| ||||||| || | || |
Sbjct 537420 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 537479
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| |||||||| || || |||||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 537480 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 537539
Query 50102 CAAC 50105
| ||
Sbjct 537540 CTAC 537543
>seq860
Length=330425
Score = 87.8 bits (96), Expect = 3e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118
||| ||||| ||||| || | ||||| || ||||| || |||||||| || || || |
Sbjct 174970 TACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAAT 175029
Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGG 79166
||||||||||| |||| || |||||||| || || |||||||| ||
Sbjct 175030 GGATTCATTATTGCCCAGGATCTGAGCAGTAGAAGCAGTTGGCATCGG 175077
Score = 87.8 bits (96), Expect = 3e-12
Identities = 102/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||| ||||| ||||||||||| ||||| || || | || || ||||||| || |||
Sbjct 180369 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 180428
Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057
|| || || || |||||||| |||||| || || || | | ||| || ||||||| ||
Sbjct 180429 TCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCAAAAATGTCCAAATGCCATGG 180487
Query 80058 TTCCAAGTATATGGC 80072
|| | ||| |||||
Sbjct 180488 CTCAAGGTAGATGGC 180502
Score = 84.2 bits (92), Expect = 3e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359
||||||||||| ||||||| || | ||| | |||||| || || || || || || |||
Sbjct 176508 TATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAA 176567
Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419
|||||||| || ||||| | || || | | || || || | || ||||| || ||
Sbjct 176568 TAAATGGTCTCAAAAATTTGCTGGTTCAAGTGCTGGGCCTCAGGACTTTCAAAGGGGTAC 176627
Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475
| | | || || || ||||| | ||||| |||||||| || || || | |||
Sbjct 176628 CTCATCAAGATGAAAGCATCTGCCAGGCCTTGCACACCAATGCCAATGGGACGATG 176683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718206714640600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |