Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1728 129 8e-25 seq1573 120 4e-22 seq860 87.8 3e-12 >seq1728 Length=2076782 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | ||||| || Sbjct 1517422 CAACCACCCTCTCACC 1517407 >seq1573 Length=591436 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| || ||||| |||||||| ||||||| || | || | Sbjct 537420 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 537479 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || |||||||| |||||||||||||||||||| ||||| ||||| | Sbjct 537480 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 537539 Query 50102 CAAC 50105 | || Sbjct 537540 CTAC 537543 >seq860 Length=330425 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| ||||| ||||| || | ||||| || ||||| || |||||||| || || || | Sbjct 174970 TACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAAT 175029 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGG 79166 ||||||||||| |||| || |||||||| || || |||||||| || Sbjct 175030 GGATTCATTATTGCCCAGGATCTGAGCAGTAGAAGCAGTTGGCATCGG 175077 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||| ||||| || || | || || ||||||| || ||| Sbjct 180369 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 180428 Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 || || || || |||||||| |||||| || || || | | ||| || ||||||| || Sbjct 180429 TCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCAAAAATGTCCAAATGCCATGG 180487 Query 80058 TTCCAAGTATATGGC 80072 || | ||| ||||| Sbjct 180488 CTCAAGGTAGATGGC 180502 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 ||||||||||| ||||||| || | ||| | |||||| || || || || || || ||| Sbjct 176508 TATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAA 176567 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 |||||||| || ||||| | || || | | || || || | || ||||| || || Sbjct 176568 TAAATGGTCTCAAAAATTTGCTGGTTCAAGTGCTGGGCCTCAGGACTTTCAAAGGGGTAC 176627 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 | | | || || || ||||| | ||||| |||||||| || || || | ||| Sbjct 176628 CTCATCAAGATGAAAGCATCTGCCAGGCCTTGCACACCAATGCCAATGGGACGATG 176683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718206714640600