Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1728 129 8e-25
seq1573 120 4e-22
seq860 87.8 2e-12
>seq1728
Length=2076782
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||||||||||| ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423
Query 42207 CAATAAGTCTCTCTCC 42222
||| | ||||| ||
Sbjct 1517422 CAACCACCCTCTCACC 1517407
>seq1573
Length=591436
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| || || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 537420 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 537479
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| |||||||| || || |||||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 537480 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 537539
Query 42207 C 42207
|
Sbjct 537540 C 537540
Score = 86.0 bits (94), Expect = 8e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
||||| |||||||| | || |||||||| ||||| || || || || || ||||| |||
Sbjct 536124 GACATGACTCCCATCCTCTGATATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCT 536183
Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853
|||| || || ||||||||||| ||||| |||||
Sbjct 536184 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 536218
>seq860
Length=330425
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||| ||||| ||||||||||| ||||| || || | || || ||||||| || |||
Sbjct 180369 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 180428
Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140
|| || || || |||||||| |||||| || || || | | ||| || ||||||| ||
Sbjct 180429 TCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCAAAAATGTCCAAATGCCATGG 180487
Query 72141 TTCCAAGTATATGGC 72155
|| | ||| |||||
Sbjct 180488 CTCAAGGTAGATGGC 180502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671081188405400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |