Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1728 129 8e-25 seq1573 120 4e-22 seq860 87.8 2e-12 >seq1728 Length=2076782 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | ||||| || Sbjct 1517422 CAACCACCCTCTCACC 1517407 >seq1573 Length=591436 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 537420 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 537479 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || |||||||| |||||||||||||||||||| ||||| ||||| | Sbjct 537480 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 537539 Query 42207 C 42207 | Sbjct 537540 C 537540 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| | || |||||||| ||||| || || || || || ||||| ||| Sbjct 536124 GACATGACTCCCATCCTCTGATATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCT 536183 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || || ||||||||||| ||||| ||||| Sbjct 536184 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 536218 >seq860 Length=330425 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| ||||||||||| ||||| || || | || || ||||||| || ||| Sbjct 180369 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 180428 Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || || || |||||||| |||||| || || || | | ||| || ||||||| || Sbjct 180429 TCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCAAAAATGTCCAAATGCCATGG 180487 Query 72141 TTCCAAGTATATGGC 72155 || | ||| ||||| Sbjct 180488 CTCAAGGTAGATGGC 180502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671081188405400