Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq695 154 3e-32 seq551 136 9e-27 seq1728 120 7e-22 seq1573 109 1e-18 seq1722 84.2 5e-11 seq712 84.2 5e-11 >seq695 Length=6654852 Score = 154 bits (170), Expect = 3e-32 Identities = 132/163 (81%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| |||| |||||||| |||||| | ||||| | || ||||| Sbjct 198002 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACTTGGATACAGTATTTTTCATT 197943 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 197942 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 197883 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || || | ||||| |||||||| ||| | ||||| ||||||| Sbjct 197882 ACCTTATGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 197840 >seq551 Length=8489217 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || ||||| || || || ||| Sbjct 2124008 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 2124067 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || |||||||| || ||||| || ||||| ||||| || || Sbjct 2124068 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2124127 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || ||||| || || || ||||| || || | || Sbjct 2124128 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCCCTGTCAAGGTC 2124187 Query 104543 TTTACAAATATCTGCATTTT 104562 || ||||| ||||||||||| Sbjct 2124188 TTCACAAAGATCTGCATTTT 2124207 >seq1728 Length=2076782 Score = 120 bits (132), Expect = 7e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || || ||| | ||||| ||||| || || ||||| || ||||||||||| || ||||| Sbjct 1517407 GGTGAGAGGGTGGTTGCCTTTGCTGCAGTTGAAGGGATCTTCTTTTCGGGTTCCTTTGCT 1517466 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| |||||| ||||||| |||||||| ||||| ||| | |||||||| || ||| | Sbjct 1517467 GCTATATTTTGGCTGAAGAAGAGAGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 1517526 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 1517527 ATTAGCAGAGATGA 1517540 >seq1573 Length=591436 Score = 109 bits (120), Expect = 1e-18 Identities = 109/140 (78%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 269121 CTTAC-GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCT 269179 ||||| |||||| | |||| |||||||| || || ||||| || |||||||| || || Sbjct 537561 CTTACAGGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCA 537502 Query 269180 TTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAAC 269239 ||||| | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| Sbjct 537501 TTTGCATCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAAT 537442 Query 269240 GAATTGATAAGCAGGGACGA 269259 ||| | || ||||| || || Sbjct 537441 GAACTCATCAGCAGAGATGA 537422 >seq1722 Length=4133303 Score = 84.2 bits (92), Expect = 5e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 238605 CAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAA 238664 ||| | |||||||| | ||||| |||||| ||||| | || ||||||||||| || Sbjct 2703390 CAGCTCCAAATGGTCCGGGAGGGCAAGATGCATGGTTTCCTGCGGATGTATTGGGCCAAG 2703449 Query 238665 AAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAAC 238724 ||||| || || ||||| | || || |||| ||||| | | || || || || Sbjct 2703450 AAGATCCTGGAGTGGACCCGCTCCCCTGAGGAGGCTCTGCAGTTTGCCATCTACCTCAAT 2703509 Query 238725 GATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGG 238768 ||| ||||| || ||||| | ||| || |||||||| ||||| Sbjct 2703510 GATCGCTACGAGCTGGACGGGAGGGACCCCAACGGATATGTAGG 2703553 >seq712 Length=9974483 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| |||||||| |||||||| || || | || ||||||| ||| || |||||||||| Sbjct 8741421 CTTTTTGAATATTGTAGTCAGACAGTGTGCGTCCATCTTCTAATTGCTTACCAGCAAAAA 8741480 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | || | ||| ||||| ||||| |||||| Sbjct 8741481 TCAGTCGCTGCTGATCGGGAGGAATTCCT 8741509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151296387900820