Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq695 154 3e-32
seq551 136 9e-27
seq1728 120 7e-22
seq1573 109 1e-18
seq1722 84.2 5e-11
seq712 84.2 5e-11
>seq695
Length=6654852
Score = 154 bits (170), Expect = 3e-32
Identities = 132/163 (81%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||||||| |||| |||||||| |||||| | ||||| | || |||||
Sbjct 198002 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACTTGGATACAGTATTTTTCATT 197943
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | ||||||||||| ||||||||||| || ||||| ||||| ||||| || |||||
Sbjct 197942 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 197883
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|| || | ||||| |||||||| ||| | ||||| |||||||
Sbjct 197882 ACCTTATGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 197840
>seq551
Length=8489217
Score = 136 bits (150), Expect = 9e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || | || ||||| || || || |||
Sbjct 2124008 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 2124067
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || |||||||| || |||||||| || ||||| || ||||| ||||| || ||
Sbjct 2124068 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2124127
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||| || || || || ||||| || || || ||||| || || | ||
Sbjct 2124128 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCCCTGTCAAGGTC 2124187
Query 104543 TTTACAAATATCTGCATTTT 104562
|| ||||| |||||||||||
Sbjct 2124188 TTCACAAAGATCTGCATTTT 2124207
>seq1728
Length=2076782
Score = 120 bits (132), Expect = 7e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|| || ||| | ||||| ||||| || || ||||| || ||||||||||| || |||||
Sbjct 1517407 GGTGAGAGGGTGGTTGCCTTTGCTGCAGTTGAAGGGATCTTCTTTTCGGGTTCCTTTGCT 1517466
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
||||| |||||| ||||||| |||||||| ||||| ||| | |||||||| || ||| |
Sbjct 1517467 GCTATATTTTGGCTGAAGAAGAGAGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 1517526
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 1517527 ATTAGCAGAGATGA 1517540
>seq1573
Length=591436
Score = 109 bits (120), Expect = 1e-18
Identities = 109/140 (78%), Gaps = 1/140 (1%)
Strand=Plus/Minus
Query 269121 CTTAC-GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCT 269179
||||| |||||| | |||| |||||||| || || ||||| || |||||||| || ||
Sbjct 537561 CTTACAGGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCA 537502
Query 269180 TTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAAC 269239
||||| | || |||||| ||||||||||||| | ||||| ||| | ||||| |||||
Sbjct 537501 TTTGCATCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAAT 537442
Query 269240 GAATTGATAAGCAGGGACGA 269259
||| | || ||||| || ||
Sbjct 537441 GAACTCATCAGCAGAGATGA 537422
>seq1722
Length=4133303
Score = 84.2 bits (92), Expect = 5e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 238605 CAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAA 238664
||| | |||||||| | ||||| |||||| ||||| | || ||||||||||| ||
Sbjct 2703390 CAGCTCCAAATGGTCCGGGAGGGCAAGATGCATGGTTTCCTGCGGATGTATTGGGCCAAG 2703449
Query 238665 AAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAAC 238724
||||| || || ||||| | || || |||| ||||| | | || || || ||
Sbjct 2703450 AAGATCCTGGAGTGGACCCGCTCCCCTGAGGAGGCTCTGCAGTTTGCCATCTACCTCAAT 2703509
Query 238725 GATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGG 238768
||| ||||| || ||||| | ||| || |||||||| |||||
Sbjct 2703510 GATCGCTACGAGCTGGACGGGAGGGACCCCAACGGATATGTAGG 2703553
>seq712
Length=9974483
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429
|||| |||||||| |||||||| || || | || ||||||| ||| || ||||||||||
Sbjct 8741421 CTTTTTGAATATTGTAGTCAGACAGTGTGCGTCCATCTTCTAATTGCTTACCAGCAAAAA 8741480
Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458
| || | ||| ||||| ||||| ||||||
Sbjct 8741481 TCAGTCGCTGCTGATCGGGAGGAATTCCT 8741509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151296387900820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |