Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq1206 87.8 9e-13
seq1189 86.0 3e-12
seq1946 84.2 1e-11
seq1466 84.2 1e-11
seq562 84.2 1e-11
>seq1206
Length=7854729
Score = 87.8 bits (96), Expect = 9e-13
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
|||| || |||| | | || |||||| | |||||||||| ||||||| |||||||
Sbjct 3559020 AGAAAAAAAAAAAGAACGAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTAT 3558961
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| ||||||| |||||||||||||| ||||
Sbjct 3558960 TAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 3558926
>seq1189
Length=11086764
Score = 86.0 bits (94), Expect = 3e-12
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 5020398 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 5020457
Query 11528 CCGTCG 11533
||| ||
Sbjct 5020458 CCGGCG 5020463
Score = 84.2 bits (92), Expect = 1e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2548642 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2548583
Query 11528 CCG 11530
|||
Sbjct 2548582 CCG 2548580
Score = 84.2 bits (92), Expect = 1e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 6831127 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6831186
Query 11528 CCG 11530
|||
Sbjct 6831187 CCG 6831189
Score = 84.2 bits (92), Expect = 1e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 6834787 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6834846
Query 11528 CCG 11530
|||
Sbjct 6834847 CCG 6834849
>seq1946
Length=1778888
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | | ||||||||||| |||||| ||||||||||||| || |||| |||||
Sbjct 87801 TTGGCCCGTACAGGGATCGAACCTGTGACCTTGGCGTTATTAGCACCACACTCTAACCAA 87860
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 87861 CTGAGCTAACTGGCC 87875
>seq1466
Length=10938614
Score = 84.2 bits (92), Expect = 1e-11
Identities = 70/85 (82%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 11446 AAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||| || || |||||| | |||||||||| ||||||| ||||||||||||| |||
Sbjct 7018365 AAAAGCACAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 7018306
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||||||||||||| ||||
Sbjct 7018305 CTCTAACCAACTGAGCTAACCGGCC 7018281
>seq562
Length=6874971
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | | |||||||||| |||||| ||||||||||||| ||||||| |||||
Sbjct 5490031 TTGGCCCGTACAGGGATCGAACCCGTGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 5489972
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 5489971 CTGAGCTAACCGGCC 5489957
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261469162420540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |