Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1206 87.8 9e-13 seq1189 86.0 3e-12 seq1946 84.2 1e-11 seq1466 84.2 1e-11 seq562 84.2 1e-11 >seq1206 Length=7854729 Score = 87.8 bits (96), Expect = 9e-13 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| || |||| | | || |||||| | |||||||||| ||||||| ||||||| Sbjct 3559020 AGAAAAAAAAAAAGAACGAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTAT 3558961 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||| |||||||||||||| |||| Sbjct 3558960 TAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 3558926 >seq1189 Length=11086764 Score = 86.0 bits (94), Expect = 3e-12 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 5020398 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 5020457 Query 11528 CCGTCG 11533 ||| || Sbjct 5020458 CCGGCG 5020463 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2548642 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2548583 Query 11528 CCG 11530 ||| Sbjct 2548582 CCG 2548580 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 6831127 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6831186 Query 11528 CCG 11530 ||| Sbjct 6831187 CCG 6831189 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 6834787 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6834846 Query 11528 CCG 11530 ||| Sbjct 6834847 CCG 6834849 >seq1946 Length=1778888 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | | ||||||||||| |||||| ||||||||||||| || |||| ||||| Sbjct 87801 TTGGCCCGTACAGGGATCGAACCTGTGACCTTGGCGTTATTAGCACCACACTCTAACCAA 87860 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 87861 CTGAGCTAACTGGCC 87875 >seq1466 Length=10938614 Score = 84.2 bits (92), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11446 AAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| || || |||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 7018365 AAAAGCACAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 7018306 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 7018305 CTCTAACCAACTGAGCTAACCGGCC 7018281 >seq562 Length=6874971 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | | |||||||||| |||||| ||||||||||||| ||||||| ||||| Sbjct 5490031 TTGGCCCGTACAGGGATCGAACCCGTGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 5489972 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 5489971 CTGAGCTAACCGGCC 5489957 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261469162420540