Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1009 141 1e-28 seq103 116 5e-21 >seq1009 Length=7125706 Score = 141 bits (156), Expect = 1e-28 Identities = 218/310 (70%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||||| | ||| Sbjct 832033 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGGAAGGAGGCAG 831974 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| || || |||||||| |||||||| | |||| Sbjct 831973 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAAGTGCTGGGCTTCCAGTACTCAGGGG 831914 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| ||| |||| || ||||| || || || || || || | || | || Sbjct 831913 AGCAGATAGTGTTTCCCATCAGTCCTTTCAGAGAGAAGGGTGCTCCAATTTCTACCATTG 831854 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| ||||| || || || ||||| || || | || || | |||| ||||| Sbjct 831853 TTTCACCAAAGATAGCACCTGGTCGTGGCTTCTCTACTAGGAGGCCTGGATACAGCTCCA 831794 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 831793 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCTGCTGCCATTTCTTTTTCTCCTGTAA 831734 Query 8978 TTATTAATAA 8987 ||||| |||| Sbjct 831733 TTATTGATAA 831724 Score = 136 bits (150), Expect = 6e-27 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| || || |||||| | || ||| |||||||||||| || ||||||| Sbjct 830038 ATGAGTCTAGTAGTTTGGAACAGTCGCTCATCATCCCATTCTGGATGCTCCTGTTTCAGG 829979 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || ||||| |||||||| |||||||| || ||||| |||||||| | ||| || Sbjct 829978 ATGTCACAGACTCTATTGTGTTCTCTGAGCCATATCGTAGCATACATCATTAAACCTGGG 829919 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | ||| || | | || || Sbjct 829918 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGAATGTGAGGTGGG 829859 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 || | ||| | |||| || || || | ||| ||||||||||| || ||||| ||| Sbjct 829858 TATAACATTTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCAATTATC 829799 Query 9862 TGA 9864 ||| Sbjct 829798 TGA 829796 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || ||||| || || || || || || || | |||| ||| Sbjct 828047 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 827988 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 ||||||||||||||| | |||||||||||| ||| | ||||| ||||| | || Sbjct 827987 ATAGGAGAGATTGGAATATGCTTCCCAGCTTTTGTAATTATAGTCACTATTGTAAGTTGG 827928 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 |||||||||||||||| ||||| ||||| Sbjct 827927 TGGGCTGTCAATCAAATGTGATCTTGCTGAA 827897 >seq103 Length=224356 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| |||||| |||| || ||||||| || ||||||||||||||||| | |||| Sbjct 119663 TCTTAACGATCTCAAAGCCAGTTGCTCCGCCAAACGTGCTGGGTTTCCAGTACTCGGGGG 119722 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || |||||||| |||||||| || | ||| | |||| Sbjct 119723 AGCAGATGGGGTTTCCGAGAAGCCCCTTGAGGGAGAACGGAGCTCCGATCTCCACCATGC 119782 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| |||| || || | || || || || ||||||| Sbjct 119783 TTTCCCCAAAAATTGAATTGGGCTGGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 119842 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 119843 GAGCATCAATGTCTCCATACAG 119864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708463556887600