Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq1009 141 1e-28
seq103 116 5e-21
>seq1009
Length=7125706
Score = 141 bits (156), Expect = 1e-28
Identities = 218/310 (70%), Gaps = 1/310 (0%)
Strand=Plus/Minus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || | || ||||| ||||| || ||| | |||| || ||||| | |||
Sbjct 832033 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGGAAGGAGGCAG 831974
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||| || |||| ||||| | ||| || || |||||||| |||||||| | ||||
Sbjct 831973 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAAGTGCTGGGCTTCCAGTACTCAGGGG 831914
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
||||||| ||| |||| || ||||| || || || || || || | || | ||
Sbjct 831913 AGCAGATAGTGTTTCCCATCAGTCCTTTCAGAGAGAAGGGTGCTCCAATTTCTACCATTG 831854
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| ||||| ||||| || || || ||||| || || | || || | |||| |||||
Sbjct 831853 TTTCACCAAAGATAGCACCTGGTCGTGGCTTCTCTACTAGGAGGCCTGGATACAGCTCCA 831794
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977
||| || |||||||| ||||| | ||||| || || ||||| |||||||||||
Sbjct 831793 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCTGCTGCCATTTCTTTTTCTCCTGTAA 831734
Query 8978 TTATTAATAA 8987
||||| ||||
Sbjct 831733 TTATTGATAA 831724
Score = 136 bits (150), Expect = 6e-27
Identities = 176/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
||||||| ||| || || |||||| | || ||| |||||||||||| || |||||||
Sbjct 830038 ATGAGTCTAGTAGTTTGGAACAGTCGCTCATCATCCCATTCTGGATGCTCCTGTTTCAGG 829979
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| || || ||||| |||||||| |||||||| || ||||| |||||||| | ||| ||
Sbjct 829978 ATGTCACAGACTCTATTGTGTTCTCTGAGCCATATCGTAGCATACATCATTAAACCTGGG 829919
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
|||| ||||| |||| || || |||| | ||| | ||| || | | || ||
Sbjct 829918 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGAATGTGAGGTGGG 829859
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|| | ||| | |||| || || || | ||| ||||||||||| || ||||| |||
Sbjct 829858 TATAACATTTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCAATTATC 829799
Query 9862 TGA 9864
|||
Sbjct 829798 TGA 829796
Score = 93.3 bits (102), Expect = 6e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348
|||||| || || | || ||||| || || || || || || || | |||| |||
Sbjct 828047 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 827988
Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408
||||||||||||||| | |||||||||||| ||| | ||||| ||||| | ||
Sbjct 827987 ATAGGAGAGATTGGAATATGCTTCCCAGCTTTTGTAATTATAGTCACTATTGTAAGTTGG 827928
Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|||||||||||||||| ||||| |||||
Sbjct 827927 TGGGCTGTCAATCAAATGTGATCTTGCTGAA 827897
>seq103
Length=224356
Score = 116 bits (128), Expect = 5e-21
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||| |||||| |||| || ||||||| || ||||||||||||||||| | ||||
Sbjct 119663 TCTTAACGATCTCAAAGCCAGTTGCTCCGCCAAACGTGCTGGGTTTCCAGTACTCGGGGG 119722
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| ||| | | || || |||||||| |||||||| || | ||| | ||||
Sbjct 119723 AGCAGATGGGGTTTCCGAGAAGCCCCTTGAGGGAGAACGGAGCTCCGATCTCCACCATGC 119782
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || || || | ||||| |||| || || | || || || || |||||||
Sbjct 119783 TTTCCCCAAAAATTGAATTGGGCTGGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 119842
Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940
||| || |||||||| || ||
Sbjct 119843 GAGCATCAATGTCTCCATACAG 119864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708463556887600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |