Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq551 113 4e-20
seq1011 96.9 3e-15
>seq551
Length=8489217
Score = 113 bits (124), Expect = 4e-20
Identities = 155/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| ||||||||||| || ||||||||||||| || ||| | ||
Sbjct 2123536 CAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 2123595
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| || ||||| ||| | || |||| ||| ||||| ||| | ||| || |||||
Sbjct 2123596 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 2123655
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || |||||| | | | ||||| | |||||| |||| |||||||
Sbjct 2123656 CTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 2123713
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || || ||||| || || ||||| ||||||||
Sbjct 2123714 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123748
Score = 109 bits (120), Expect = 4e-19
Identities = 169/237 (71%), Gaps = 7/237 (3%)
Strand=Plus/Plus
Query 16702 CATTTACC-CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760
|| ||||| | |||| || | ||| || | ||||| ||||||||||| || |||||||
Sbjct 2123288 CAGTTACCACCCCTC--AGGCGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGT 2123345
Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820
|||||| || ||| | || |||| || ||||| ||| | || |||| ||| ||||
Sbjct 2123346 AGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGT 2123405
Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878
| ||| | ||| || ||||| || || || |||||| | | | ||||| |
Sbjct 2123406 CAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACT 2123463
Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||||| |||| ||||||||| || || ||||| || || ||||| ||||||||
Sbjct 2123464 GGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123520
Score = 109 bits (120), Expect = 4e-19
Identities = 150/208 (72%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
||||| ||||||||||| || ||||||||||||| || ||| | || |||| ||
Sbjct 2124002 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGC 2124061
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
||||| ||| | || |||| ||| ||||| ||| | ||| || ||||| || ||
Sbjct 2124062 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 2124121
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| |||||| | | | ||||| | |||||| |||| ||||||||| || || |
Sbjct 2124122 GC--CTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCCCTG 2124179
Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938
||| || || ||||| |||||||||||
Sbjct 2124180 TCAAGGTCTTCACAAAGATCTGCATTTT 2124207
Score = 107 bits (118), Expect = 2e-18
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
||||| ||||||||||| || ||||||||||||| || ||| | || |||| ||
Sbjct 2123774 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCTTCCAGCTGC 2123833
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
||||| ||| | || |||| ||| ||||| ||| | ||| || ||||| || ||
Sbjct 2123834 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 2123893
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| |||||| | | | ||||| | |||||| |||| ||||||||| || || |
Sbjct 2123894 GC--CTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAG 2123951
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
|||| || || ||||| ||||||||
Sbjct 2123952 TCAGGGTCTTCACAAAGATCTGCAT 2123976
>seq1011
Length=3435084
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/209 (71%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
||||| ||||||||||| || ||||||||||| | || ||| | || |||| ||
Sbjct 2734642 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 2734701
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
||||| ||| | || |||| ||| ||||| || | ||| || ||||| || ||
Sbjct 2734702 TTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 2734761
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| ||| || | | | ||||| | |||||| |||| ||||||||| || || |
Sbjct 2734762 GC--CTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAG 2734819
Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|||| || || ||||| |||||||| |||
Sbjct 2734820 TCAGGGTCTTCACAAAGATCTGCATGTTG 2734848
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
||||| ||||||||||| || ||||||||||| | || ||| | || |||| ||
Sbjct 2733958 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 2734017
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
||||| ||| | || |||| ||| ||||| || | ||| || ||||| || ||
Sbjct 2734018 TTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 2734077
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| ||| || | | | ||||| | |||||| |||| ||||||||| || || |
Sbjct 2734078 GC--CTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAG 2734135
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
|||| || || ||||| ||||||||
Sbjct 2734136 TCAGGGTCTTCACAAAGATCTGCAT 2734160
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
||||| ||||||||||| || ||||||||||| | || ||| | || |||| ||
Sbjct 2734186 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 2734245
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
||||| ||| | || |||| ||| ||||| || | ||| || ||||| || ||
Sbjct 2734246 TTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 2734305
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| ||| || | | | ||||| | |||||| |||| ||||||||| || || |
Sbjct 2734306 GC--CTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAG 2734363
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
|||| || || ||||| ||||||||
Sbjct 2734364 TCAGGGTCTTCACAAAGATCTGCAT 2734388
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
||||| ||||||||||| || ||||||||||| | || ||| | || |||| ||
Sbjct 2734414 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 2734473
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
||||| ||| | || |||| ||| ||||| || | ||| || ||||| || ||
Sbjct 2734474 TTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 2734533
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| ||| || | | | ||||| | |||||| |||| ||||||||| || || |
Sbjct 2734534 GC--CTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAG 2734591
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
|||| || || ||||| ||||||||
Sbjct 2734592 TCAGGGTCTTCACAAAGATCTGCAT 2734616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405053860575850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |