Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1728 114 2e-20 seq1573 111 2e-19 seq860 111 2e-19 >seq1728 Length=2076782 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | ||||| || Sbjct 1517422 CAACCACCCTCTCACC 1517407 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 33048 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33107 |||||||| || ||||| ||||||||||||||||| |||| ||||| ||||| ||| Sbjct 1512665 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCCAGAACATGAGAGATAAAGTAT 1512606 Query 33108 TTTTCGTCTGGTGTTAGTTTATTCCA 33133 ||||| |||| | |||| || ||||| Sbjct 1512605 TTTTCATCTGCTTTTAGCTTGTTCCA 1512580 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 ||||| | |||||||| |||||||||| |||||||| || |||||||||||||| || Sbjct 1514982 CTGTCTTCAATCCACTTCAGAGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTTTCA 1514923 Query 32889 ATAGCATTAAA 32899 ||||||||||| Sbjct 1514922 ATAGCATTAAA 1514912 >seq1573 Length=591436 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 537420 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 537479 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| || || |||||||| ||||||||||| |||||||| ||||| ||||| | Sbjct 537480 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 537539 Query 32803 C 32803 | Sbjct 537540 C 537540 >seq860 Length=330425 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || ||||||||||| | ||| || || || ||||| || || || | Sbjct 187347 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATTCTCGCTGCCAGGA 187406 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | ||||| || || |||| ||||| ||| || || |||| || ||||| || |||| Sbjct 187407 TAGCATAGTCAGGGTGTTTGGTAGTCAGAGTCGCAGCCGTTTCAGCAGCCAGCGTATCCA 187466 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || ||||| |||||| | |||| || || || |||||||| Sbjct 187467 GTTCCACTGTTGTGACACCACTGTATAGCCCCTGAATTACCTTCAT 187512 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 ||||||| || || ||||||| || || || |||||||| || || || || ||||| | Sbjct 176506 CATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCAT 176565 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 |||||||||| || || || | || || | | || || || | || ||||| || | Sbjct 176566 AATAAATGGTCTCAAAAATTTGCTGGTTCAAGTGCTGGGCCTCAGGACTTTCAAAGGGGT 176625 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | | || || || ||||| | ||||| |||||||| || || || | ||| | Sbjct 176626 ACCTCATCAAGATGAAAGCATCTGCCAGGCCTTGCACACCAATGCCAATGGGACGATGGC 176685 Query 62610 TCTTATTAGAGATTTCAGC 62628 | || ||| |||||| Sbjct 176686 GTCTGTTGGAGCGTTCAGC 176704 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 ||||| ||||| ||||||||||| ||||| || || | || || ||||||| || || Sbjct 180369 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 180428 Query 63131 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 || || || || |||||||| |||||| || || || | | ||| || ||||||| || Sbjct 180429 TCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCAAAAATGTCCAAATGCCATGG 180487 Query 63190 TTCCAAGTATATGGC 63204 || | ||| ||||| Sbjct 180488 CTCAAGGTAGATGGC 180502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633577230434000