Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1728 114 2e-20
seq1573 111 2e-19
seq860 111 2e-19
>seq1728
Length=2076782
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||||||||| | ||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423
Query 32803 CAATAAGTCTCTCTCC 32818
||| | ||||| ||
Sbjct 1517422 CAACCACCCTCTCACC 1517407
Score = 84.2 bits (92), Expect = 3e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 33048 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33107
|||||||| || ||||| ||||||||||||||||| |||| ||||| ||||| |||
Sbjct 1512665 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCCAGAACATGAGAGATAAAGTAT 1512606
Query 33108 TTTTCGTCTGGTGTTAGTTTATTCCA 33133
||||| |||| | |||| || |||||
Sbjct 1512605 TTTTCATCTGCTTTTAGCTTGTTCCA 1512580
Score = 84.2 bits (92), Expect = 3e-11
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888
||||| | |||||||| |||||||||| |||||||| || |||||||||||||| ||
Sbjct 1514982 CTGTCTTCAATCCACTTCAGAGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTTTCA 1514923
Query 32889 ATAGCATTAAA 32899
|||||||||||
Sbjct 1514922 ATAGCATTAAA 1514912
>seq1573
Length=591436
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| || || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 537420 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 537479
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| |||||||| || || |||||||| ||||||||||| |||||||| ||||| ||||| |
Sbjct 537480 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 537539
Query 32803 C 32803
|
Sbjct 537540 C 537540
>seq860
Length=330425
Score = 111 bits (122), Expect = 2e-19
Identities = 124/166 (75%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
|||| |||| ||| || ||||||||||| | ||| || || || ||||| || || || |
Sbjct 187347 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATTCTCGCTGCCAGGA 187406
Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929
| ||||| || || |||| ||||| ||| || || |||| || ||||| || ||||
Sbjct 187407 TAGCATAGTCAGGGTGTTTGGTAGTCAGAGTCGCAGCCGTTTCAGCAGCCAGCGTATCCA 187466
Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975
||| || ||||| |||||| | |||| || || || ||||||||
Sbjct 187467 GTTCCACTGTTGTGACACCACTGTATAGCCCCTGAATTACCTTCAT 187512
Score = 84.2 bits (92), Expect = 3e-11
Identities = 138/199 (69%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489
||||||| || || ||||||| || || || |||||||| || || || || ||||| |
Sbjct 176506 CATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCAT 176565
Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549
|||||||||| || || || | || || | | || || || | || ||||| || |
Sbjct 176566 AATAAATGGTCTCAAAAATTTGCTGGTTCAAGTGCTGGGCCTCAGGACTTTCAAAGGGGT 176625
Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609
| | | | || || || ||||| | ||||| |||||||| || || || | ||| |
Sbjct 176626 ACCTCATCAAGATGAAAGCATCTGCCAGGCCTTGCACACCAATGCCAATGGGACGATGGC 176685
Query 62610 TCTTATTAGAGATTTCAGC 62628
| || ||| ||||||
Sbjct 176686 GTCTGTTGGAGCGTTCAGC 176704
Score = 84.2 bits (92), Expect = 3e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130
||||| ||||| ||||||||||| ||||| || || | || || ||||||| || ||
Sbjct 180369 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 180428
Query 63131 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189
|| || || || |||||||| |||||| || || || | | ||| || ||||||| ||
Sbjct 180429 TCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCAAAAATGTCCAAATGCCATGG 180487
Query 63190 TTCCAAGTATATGGC 63204
|| | ||| |||||
Sbjct 180488 CTCAAGGTAGATGGC 180502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633577230434000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |