Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 118 1e-21
seq1189 93.3 5e-14
seq1866 89.7 6e-13
seq551 89.7 6e-13
seq1135 86.0 7e-12
>seq1011
Length=3435084
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| ||| | |||| ||| |||||| || || ||||| |||| ||| || ||| |
Sbjct 2733946 CGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 2734005
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| ||||| || || || | ||||||||||| || | || ||||||
Sbjct 2734006 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTG 2734065
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| || |||| || | | ||||| || | || || || | ||||||
Sbjct 2734066 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 2734125
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| ||||| || || ||||| |||||||| |||||
Sbjct 2734126 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734160
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| ||| | |||| ||| |||||| || || ||||| |||| ||| || ||| |
Sbjct 2734174 CGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 2734233
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| ||||| || || || | ||||||||||| || | || ||||||
Sbjct 2734234 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTG 2734293
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| || |||| || | | ||||| || | || || || | ||||||
Sbjct 2734294 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 2734353
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| ||||| || || ||||| |||||||| |||||
Sbjct 2734354 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734388
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| ||| | |||| ||| |||||| || || ||||| |||| ||| || ||| |
Sbjct 2734402 CGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 2734461
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| ||||| || || || | ||||||||||| || | || ||||||
Sbjct 2734462 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTG 2734521
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| || |||| || | | ||||| || | || || || | ||||||
Sbjct 2734522 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 2734581
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| ||||| || || ||||| |||||||| |||||
Sbjct 2734582 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734616
Score = 118 bits (130), Expect = 1e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| ||| | |||| ||| |||||| || || ||||| |||| ||| || ||| |
Sbjct 2734630 CGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 2734689
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| ||||| || || || | ||||||||||| || | || ||||||
Sbjct 2734690 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTG 2734749
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| || |||| || | | ||||| || | || || || | ||||||
Sbjct 2734750 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 2734809
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|| ||||| || || ||||| |||||||| ||||| ||
Sbjct 2734810 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2734847
>seq1189
Length=11086764
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 6830221 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 6830280
Query 57066 ATACTACCGAGGATTG 57081
|||||| |||||| ||
Sbjct 6830281 ATACTAACGAGGAGTG 6830296
>seq1866
Length=6343108
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || || | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 457488 CTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 457429
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 457428 TACTAACGAGGA 457417
>seq551
Length=8489217
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2128503 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2128562
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 2128563 TACTAACGAGGA 2128574
>seq1135
Length=6065349
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1212284 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1212343
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 1212344 TACTAACGAGGA 1212355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543165846043600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |