Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1009 145 1e-29 seq103 100 4e-16 >seq1009 Length=7125706 Score = 145 bits (160), Expect = 1e-29 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||| ||| ||||||| || || || ||||| || Sbjct 830038 ATGAGTCTAGTAGTTTGGAACAGTCGCTCATCATCCCATTCTGGATGCTCCTGTTTCAGG 829979 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||| || ||||||||||| |||||||| || || |||||||||||||| || Sbjct 829978 ATGTCACAGACTCTATTGTGTTCTCTGAGCCATATCGTAGCATACATCATTAAACCTGGG 829919 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| ||| | || || | | || | Sbjct 829918 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGAATGTGAGGTGGG 829859 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || ||||| ||||||||||| || ||||| | | Sbjct 829858 TATAACATTTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCAATTATC 829799 Query 9967 TGA 9969 ||| Sbjct 829798 TGA 829796 Score = 120 bits (132), Expect = 4e-22 Identities = 204/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 832033 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGGAAGGAGGCAG 831974 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || || |||||||| ||||||||| | |||| Sbjct 831973 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAAGTGCTGGGCTTCCAGTACTCAGGGG 831914 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| ||| |||| || ||||||| || || || || || | || | || Sbjct 831913 AGCAGATAGTGTTTCCCATCAGTCCTTTCAGAGAGAAGGGTGCTCCAATTTCTACCATTG 831854 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||| ||||| || || || || || || | || ||| | || || || | Sbjct 831853 TTTCACCAAAGATAGCACCTGGTCGTGGCTTCTCTACTAGGAGGCCTGGATACAGCTCCA 831794 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 831793 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCTGCTGCCATTTCTTTTTCTCCT 831738 Score = 86.0 bits (94), Expect = 9e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 10865 TAAAACCCCGTCCGCGTACAATCGCACCAATAACGATCAAACCCCACCGTCATGCATACC 10924 ||||| ||||||| |||||| || || || ||||| || ||| |||||| ||||| Sbjct 827151 TAAAATCCCGTCCTCGTACAGTCACATTCGTATCGATCGAATCCCGTCGTCATACATACT 827092 Query 10925 CCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTTGGCTGCA 10966 |||| ||||||||||||| || ||||| || ||||||||| Sbjct 827091 CCTCTGTTCTGGCACGGGTTGGAGCAGCACGGATTGGCTGCA 827050 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | ||| ||| ||||| Sbjct 831213 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGTATCTGAAAAGTG 831154 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| || | ||||||| |||| || |||||||| || || || || ||||||||| Sbjct 831153 TCTGGCAGAAGCGGATGCCAGTGGTACAGAGTATTGAATTCAGCTGCAATGCGGTTCTGG 831094 Query 9613 TACTGAAAGGCGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCC 9671 || ||||| ||| | ||||| | ||| || ||||| | || | ||||||||| || Sbjct 831093 TATTGAAA-GCGTTGGTTGAACAACAGCTCAGGATCAAACTTCAGTTTGAAGTGGTAGCC 831035 Query 9672 GCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 || || || || || || | | || | ||| || || || || || || Sbjct 831034 ACTCAGGTGTTGTACGTAGTCTTCAATAACAATCTTGATCGTCTCTCCTGT 830984 >seq103 Length=224356 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||| || |||||||||||||||||| | |||||||||||| ||| | | ||||| Sbjct 119689 CCGCCAAACGTGCTGGGTTTCCAGTACTCGGGGGAGCAGATGGGGTTTCCGAGAAGCCCC 119748 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 || | ||| |||||||| || | ||| | ||||| || || || || | | ||| | Sbjct 119749 TTGAGGGAGAACGGAGCTCCGATCTCCACCATGCTTTCCCCAAAAATTGAATTGGGCTGG 119808 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| || | || | ||| || | ||| ||||| || || Sbjct 119809 GGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCT 119868 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 119869 TCCAGCTCTGCCGCCTTCTCGTCCTCTCCTGCA 119901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723665442761000