Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq1009 145 1e-29
seq103 100 4e-16
>seq1009
Length=7125706
Score = 145 bits (160), Expect = 1e-29
Identities = 178/243 (73%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786
|| || | ||| ||||| |||| |||| ||| ||||||| || || || ||||| ||
Sbjct 830038 ATGAGTCTAGTAGTTTGGAACAGTCGCTCATCATCCCATTCTGGATGCTCCTGTTTCAGG 829979
Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846
| || ||||| || ||||||||||| |||||||| || || |||||||||||||| ||
Sbjct 829978 ATGTCACAGACTCTATTGTGTTCTCTGAGCCATATCGTAGCATACATCATTAAACCTGGG 829919
Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906
|| ||||||||||| || | ||| || | ||| ||| | || || | | || |
Sbjct 829918 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGAATGTGAGGTGGG 829859
Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966
|| | ||| | |||| || || || || ||||| ||||||||||| || ||||| | |
Sbjct 829858 TATAACATTTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCAATTATC 829799
Query 9967 TGA 9969
|||
Sbjct 829798 TGA 829796
Score = 120 bits (132), Expect = 4e-22
Identities = 204/296 (69%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
|||| || | || ||||| || ||||||||| || ||||| ||| | || || |
Sbjct 832033 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGGAAGGAGGCAG 831974
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || | || || || || || | || || || |||||||| ||||||||| | ||||
Sbjct 831973 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAAGTGCTGGGCTTCCAGTACTCAGGGG 831914
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
||||||| ||| |||| || ||||||| || || || || || | || | ||
Sbjct 831913 AGCAGATAGTGTTTCCCATCAGTCCTTTCAGAGAGAAGGGTGCTCCAATTTCTACCATTG 831854
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
| ||||| ||||| ||||| || || || || || || | || ||| | || || || |
Sbjct 831853 TTTCACCAAAGATAGCACCTGGTCGTGGCTTCTCTACTAGGAGGCCTGGATACAGCTCCA 831794
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
||| || | ||| ||||| || |||||| || || || || || || || |||
Sbjct 831793 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCTGCTGCCATTTCTTTTTCTCCT 831738
Score = 86.0 bits (94), Expect = 9e-12
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 10865 TAAAACCCCGTCCGCGTACAATCGCACCAATAACGATCAAACCCCACCGTCATGCATACC 10924
||||| ||||||| |||||| || || || ||||| || ||| |||||| |||||
Sbjct 827151 TAAAATCCCGTCCTCGTACAGTCACATTCGTATCGATCGAATCCCGTCGTCATACATACT 827092
Query 10925 CCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTTGGCTGCA 10966
|||| ||||||||||||| || ||||| || |||||||||
Sbjct 827091 CCTCTGTTCTGGCACGGGTTGGAGCAGCACGGATTGGCTGCA 827050
Score = 86.0 bits (94), Expect = 9e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552
|| || |||||||| | ||| || | | || |||| | ||| ||| |||||
Sbjct 831213 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGTATCTGAAAAGTG 831154
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
|| |||| || | ||||||| |||| || |||||||| || || || || |||||||||
Sbjct 831153 TCTGGCAGAAGCGGATGCCAGTGGTACAGAGTATTGAATTCAGCTGCAATGCGGTTCTGG 831094
Query 9613 TACTGAAAGGCGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCC 9671
|| ||||| ||| | ||||| | ||| || ||||| | || | ||||||||| ||
Sbjct 831093 TATTGAAA-GCGTTGGTTGAACAACAGCTCAGGATCAAACTTCAGTTTGAAGTGGTAGCC 831035
Query 9672 GCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722
|| || || || || || | | || | ||| || || || || || ||
Sbjct 831034 ACTCAGGTGTTGTACGTAGTCTTCAATAACAATCTTGATCGTCTCTCCTGT 830984
>seq103
Length=224356
Score = 100 bits (110), Expect = 4e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025
||||| || |||||||||||||||||| | |||||||||||| ||| | | |||||
Sbjct 119689 CCGCCAAACGTGCTGGGTTTCCAGTACTCGGGGGAGCAGATGGGGTTTCCGAGAAGCCCC 119748
Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085
|| | ||| |||||||| || | ||| | ||||| || || || || | | ||| |
Sbjct 119749 TTGAGGGAGAACGGAGCTCCGATCTCCACCATGCTTTCCCCAAAAATTGAATTGGGCTGG 119808
Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145
||||| || | | ||||| || | || | ||| || | ||| ||||| || ||
Sbjct 119809 GGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCT 119868
Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178
|||| ||| || || |||| | ||| ||| ||
Sbjct 119869 TCCAGCTCTGCCGCCTTCTCGTCCTCTCCTGCA 119901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723665442761000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |