Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 147 2e-30
seq551 138 1e-27
seq241 82.4 9e-11
>seq1011
Length=3435084
Score = 147 bits (162), Expect = 2e-30
Identities = 174/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || || | |||| ||| || |||| || |||||| ||||| |||||||| |
Sbjct 2734616 TGCCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 2734675
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || |||||| | || || ||||||||||| || || |||| | ||||||||||| |
Sbjct 2734676 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGG 2734735
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || ||||||||| |||||| ||||| || | | ||||| || | || |
Sbjct 2734736 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 2734795
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600
| |||| |||||||| ||||| ||||| || || |||||||| ||||| ||| ||
Sbjct 2734796 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAAC 2734851
Score = 143 bits (158), Expect = 3e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || || | |||| ||| || |||| || |||||| ||||| |||||||| |
Sbjct 2734160 TGCCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 2734219
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || |||||| | || || ||||||||||| || || |||| | ||||||||||| |
Sbjct 2734220 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGG 2734279
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || ||||||||| |||||| ||||| || | | ||||| || | || |
Sbjct 2734280 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 2734339
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| |||||||| ||||| ||||| || || |||||||| |||||
Sbjct 2734340 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734388
Score = 143 bits (158), Expect = 3e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || || | |||| ||| || |||| || |||||| ||||| |||||||| |
Sbjct 2734388 TGCCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 2734447
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || |||||| | || || ||||||||||| || || |||| | ||||||||||| |
Sbjct 2734448 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGG 2734507
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || ||||||||| |||||| ||||| || | | ||||| || | || |
Sbjct 2734508 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 2734567
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| |||||||| ||||| ||||| || || |||||||| |||||
Sbjct 2734568 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734616
Score = 141 bits (156), Expect = 1e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425
||| || || | |||| ||| || |||| || |||||| ||||| |||||||| ||
Sbjct 2733933 GCCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2733992
Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485
|| |||||| | || || ||||||||||| || || |||| | ||||||||||| ||
Sbjct 2733993 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGG 2734052
Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545
| || ||||||||| |||||| ||||| || | | ||||| || | || ||
Sbjct 2734053 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 2734112
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| |||||||| ||||| ||||| || || |||||||| |||||
Sbjct 2734113 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734160
>seq551
Length=8489217
Score = 138 bits (152), Expect = 1e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || || | |||| ||||| |||| || |||||| ||||| ||||||||||
Sbjct 2123520 TGCCACCCCTCAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 2123579
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || |||||| | || || ||||||||||| || || |||| | ||||||||| | |
Sbjct 2123580 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 2123639
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || ||||||||| |||||| ||| | || | | ||||| || | || |
Sbjct 2123640 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAA 2123699
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| |||||||| ||||| ||||| || || |||||||| |||||
Sbjct 2123700 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123748
Score = 136 bits (150), Expect = 4e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||| || |||| || |||||| ||||| ||||||||||| || |||||| |
Sbjct 2123306 CGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 2123365
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || ||||||||||| || || |||| | ||||||||| | || | || ||||||
Sbjct 2123366 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTG 2123425
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||| | || | | ||||| || | || || |||| ||||||
Sbjct 2123426 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 2123485
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||||| ||||| || || |||||||| |||||
Sbjct 2123486 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123520
Score = 134 bits (148), Expect = 2e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || || | |||| ||| || |||| || |||||| ||||| ||||||||||
Sbjct 2123748 TGCCACCCCTCAGGCGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 2123807
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| | |||||| | || || ||||||||||| || || |||| | ||||||||| | |
Sbjct 2123808 ACAAGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 2123867
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || ||||||||| |||||| ||| | || | | ||||| || | || |
Sbjct 2123868 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAA 2123927
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| |||||||| ||||| ||||| || || |||||||| |||||
Sbjct 2123928 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123976
Score = 127 bits (140), Expect = 2e-24
Identities = 145/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || |||||| | || || ||||||||||| || ||
Sbjct 2124013 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 2124072
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| | ||||||||| | || | || ||||||||| |||||| ||| | |
Sbjct 2124073 GATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 2124132
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| || | || || |||| |||||||| || || |||| || || ||
Sbjct 2124133 CTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCCCTGTCAAGGTCTTCAC 2124192
Query 46582 AAAGATTTGCATTTT 46596
|||||| ||||||||
Sbjct 2124193 AAAGATCTGCATTTT 2124207
>seq241
Length=77657
Score = 82.4 bits (90), Expect = 9e-11
Identities = 99/131 (76%), Gaps = 3/131 (2%)
Strand=Plus/Minus
Query 46467 AGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCA 46526
|||| || ||||| |||| || || ||||||||| |||||| ||||| || | |
Sbjct 76687 AGCGGGGCCGGTCG-CCGGTAC-CT-TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGA 76631
Query 46527 CCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGA 46586
|||||||| | ||||| || | |||||||||||||||||||| || || || ||||
Sbjct 76630 TGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTTTTGCCCGTCAGGGTCTTCACGAAGA 76571
Query 46587 TTTGCATTTTG 46597
| ||||| |||
Sbjct 76570 TCTGCATCTTG 76560
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565189542205800
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