Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq551 140 3e-28 seq1011 132 5e-26 seq1573 100 3e-16 >seq551 Length=8489217 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 2123748 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2123689 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | ||||| Sbjct 2123688 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 2123630 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 2123629 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 2123570 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| ||||||||||| |||| || ||| Sbjct 2123569 CATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGCCTGAGGGGTGGC 2123521 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 2123520 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2123461 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | ||||| Sbjct 2123460 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 2123402 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 2123401 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 2123342 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| | |||||||| |||| || || Sbjct 2123341 CATCCAGAAGGAGTCCACTCTGCACCTTGTGCTGCGCCTGAGGGGTGG 2123294 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 2123976 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2123917 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | ||||| Sbjct 2123916 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 2123858 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||| | ||||||||| Sbjct 2123857 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAA 2123798 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| | |||||||| |||| || ||| Sbjct 2123797 CATCCAGAAGGAGTCCACTCTGCACCTTGTGCTGCGCCTGAGGGGTGGC 2123749 Score = 125 bits (138), Expect = 7e-24 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || || || || || | || || || ||||||||| | || || ||| | Sbjct 2124208 AAAAATGCAGATCTTTGTGAAGACCTTGACAGGGAAGACCATCACCCTGGAGGTTGAGCC 2124149 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || |||| | | | |||| | || | || |||| ||||| || || ||||| | | Sbjct 2124148 CAGTGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTG 2124090 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| |||| || | || ||||| |||||||| || | ||||||||| ||||| Sbjct 2124089 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACT 2124030 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| | || ||||| || |||| |||||||| ||| Sbjct 2124029 ACAACATCCAGAAGGAGTCCACTCTGCACAATGTTCTGCCCTTGAGAGGTGGC 2123977 >seq1011 Length=3435084 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 2734160 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2734101 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| ||||||| Sbjct 2734100 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 2734041 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 2734040 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2733981 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| | |||||||| |||| || ||| Sbjct 2733980 ATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGGC 2733933 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 2734388 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2734329 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| ||||||| Sbjct 2734328 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 2734269 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 2734268 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2734209 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| | |||||||| |||| || ||| Sbjct 2734208 ATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGGC 2734161 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 2734616 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2734557 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| ||||||| Sbjct 2734556 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 2734497 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 2734496 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2734437 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| | |||||||| |||| || ||| Sbjct 2734436 ATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGGC 2734389 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 2734847 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCC 2734788 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || |||||| ||||| Sbjct 2734787 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGAC 2734728 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| || | ||||||||| |||||| Sbjct 2734727 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 2734668 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | || ||||| | |||||||| |||| || ||| Sbjct 2734667 AACATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGGC 2734617 >seq1573 Length=591436 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 |||||||||| | ||||| || || |||||||| || |||||||| ||| ||||| Sbjct 540648 CACCTCCTCGGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 540707 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || ||||| || || ||||| ||||||||||| || |||| |||||||||| Sbjct 540708 GTACTGGATGGGGAAGATGACAAAGCGGCGGGGGTTGTCCCGCAGCAGCGGCTCC 540762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500129566313600