Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq1079 125 5e-23
seq1206 105 5e-17
seq2135 102 6e-16
>seq1079
Length=2839117
Score = 125 bits (138), Expect = 5e-23
Identities = 363/552 (66%), Gaps = 14/552 (3%)
Strand=Plus/Plus
Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669
|| ||||| || ||||||||||||||||| | | | || | | ||| ||||||||
Sbjct 1550885 GCCCCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAACTCTTTGCCATTGAAG 1550944
Query 517670 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728
|| | || |||| ||| | ||| || ||||||| || || ||||| || || ||
Sbjct 1550945 AAGTCCTGCAGCAGTT-TCTGAATCTTTGGGATACGAGTAGACCCACCAACCAACACGAT 1551003
Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788
|| || | ||| ||||| || ||||| | |||| | | ||||| || || || ||
Sbjct 1551004 GTCGTGGATCTGCGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAG 1551063
Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 517847
| | |||| ||| | | || ||||| || |||||| |||| | || |
Sbjct 1551064 GGTACCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGG--ACGTG 1551121
Query 517848 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906
|| || ||||| || || | | |||||||| |||||| | | ||||| ||||||
Sbjct 1551122 TAGAAGTCAATGCCCTCATAGAGAGAATCAATTTCAATACTGGCCTGAGTGCTAGAAGAG 1551181
Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCTGA 517962
|| | ||| || |||||||||||||| || | || | || | | ||| | ||
Sbjct 1551182 AGGGTACGCTTTGCACGTTCACATGCAGTGCGCAGGCGACGAACTGCTCTCTTGTTCTCG 1551241
Query 517963 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 518022
|||| |||| | || | || | |||||| || | | | | || | ||
Sbjct 1551242 CTGAT----ATCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCG 1551297
Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082
|||||||||||||| || ||||| | ||||| |||| || | | | || | || |
Sbjct 1551298 GTTATCAAAATCTTCTCCACCCAAGTGAGTATCACCTGCAGTGGATTTCACCTCAAAGAT 1551357
Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142
||||| || | || || || | |||||| ||| ||||| || | ||||| |||||
Sbjct 1551358 GCCATCCTCGATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAG 1551417
Query 518143 TACATTCATTTC 518154
|| ||| ||||
Sbjct 1551418 AACGTTCCTTTC 1551429
Score = 104 bits (114), Expect = 2e-16
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582
|||| | || ||||||||||| |||||| |||| | || || ||||| |||||||
Sbjct 1552543 CAAAGACTGTGTTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCATCACCAATCAACC 1552602
Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642
||||| ||||| || | ||| || ||| || || || ||||| || ||||| ||||
Sbjct 1552603 TCTCTGTGTCTGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCATTGGCAA 1552662
Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702
| || || || || |||| ||| ||||||| ||||| | | || || || | |||||
Sbjct 1552663 TGATCTCCACCTTCCCATGTTGGAATACACCAACACAGGAATAGGTGGTGCCAAGATCAA 1552722
Query 518703 TACCAATAGC 518712
| || | |||
Sbjct 1552723 TTCCGACAGC 1552732
Score = 86.0 bits (94), Expect = 5e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
|| || || |||||||| |||| |||||||||||| || || || ||||||| | ||
Sbjct 1551534 TTCTTGTCCAGACCATAAGCAATAGCAGCAGCAGTCGGCTCGTTGATAATTCGGAGTACG 1551593
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || || || || |||| |||||||| || || || | || || || || |||||
Sbjct 1551594 TTGAGCCCTGCGATAGTTCCAGCATCTTTTGTAGCCTGGCGCTGGGAGTCATTGAAATAG 1551653
Query 518285 GCAGGAACAGTAATAACGGC 518304
|| || ||||| | ||| ||
Sbjct 1551654 GCTGGTACAGTGACAACAGC 1551673
>seq1206
Length=7854729
Score = 105 bits (116), Expect = 5e-17
Identities = 279/417 (67%), Gaps = 8/417 (2%)
Strand=Plus/Plus
Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318
||| | || || || |||||||| ||||| | ||||| ||||| || || || |||||
Sbjct 7504500 GCACTGACGTTCAGGATACCATTTGCATCTATGTCAAAAGTGACCTCGATCTGGGGGACT 7504559
Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378
|| | | || || ||||| || | || ||| | ||||| || || || ||
Sbjct 7504560 CCACGGGGCGCTGGGGGGATGCCCGTTAGATCAAACTTGCCCAGCAAGTTGTTGTCCTTT 7504619
Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 517436
|| | | |||||||| || | |||| || | ||| | | || || || || |
Sbjct 7504620 GTCATAGCCCTCTCACCCTCAAACACCTGGACCAGGACACTGC--TCTGGTTGTCCGAGT 7504677
Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495
| || || || ||||| ||| ||| ||| || || ||||| | | || | | |
Sbjct 7504678 AGGTGGTGAAGG-TCTGGGTTTGTTTGGTAGGGATGGTAGTGTTACGCTTGATGAGAGCG 7504736
Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555
||||| | ||||| ||||| || | || || || ||||| |||||||| | ||||
Sbjct 7504737 GTCATCACTCCACCAGCTGTCTCAATGCCCAGGGACAGAGGCGTGACATCCAACAGGAGC 7504796
Query 517556 ATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 517614
| || || | || || | | || | || | || ||||||||||| | |||||| ||
Sbjct 7504797 AGATCCTGCACGTTCTC-TGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGCC 7504855
Query 517615 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 517671
||| |||||||||||||| ||||| | | | || || | ||| |||||||| ||
Sbjct 7504856 ATAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAA 7504912
>seq2135
Length=2661649
Score = 102 bits (112), Expect = 6e-16
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052
||| || || ||| | |||||||| ||||| || ||||| ||||| | | |||||
Sbjct 1250655 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAGGCGGATATCCGGAAGGTTAT 1250714
Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112
||||||||| || || ||| | || ||| ||||||||||||||||| ||||| |||||
Sbjct 1250715 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 1250774
Query 367113 TGATGG 367118
||||||
Sbjct 1250775 TGATGG 1250780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780479254921990
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |