Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1079 125 5e-23 seq1206 105 5e-17 seq2135 102 6e-16 >seq1079 Length=2839117 Score = 125 bits (138), Expect = 5e-23 Identities = 363/552 (66%), Gaps = 14/552 (3%) Strand=Plus/Plus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 || ||||| || ||||||||||||||||| | | | || | | ||| |||||||| Sbjct 1550885 GCCCCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAACTCTTTGCCATTGAAG 1550944 Query 517670 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 || | || |||| ||| | ||| || ||||||| || || ||||| || || || Sbjct 1550945 AAGTCCTGCAGCAGTT-TCTGAATCTTTGGGATACGAGTAGACCCACCAACCAACACGAT 1551003 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 || || | ||| ||||| || ||||| | |||| | | ||||| || || || || Sbjct 1551004 GTCGTGGATCTGCGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAG 1551063 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 517847 | | |||| ||| | | || ||||| || |||||| |||| | || | Sbjct 1551064 GGTACCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGG--ACGTG 1551121 Query 517848 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906 || || ||||| || || | | |||||||| |||||| | | ||||| |||||| Sbjct 1551122 TAGAAGTCAATGCCCTCATAGAGAGAATCAATTTCAATACTGGCCTGAGTGCTAGAAGAG 1551181 Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCTGA 517962 || | ||| || |||||||||||||| || | || | || | | ||| | || Sbjct 1551182 AGGGTACGCTTTGCACGTTCACATGCAGTGCGCAGGCGACGAACTGCTCTCTTGTTCTCG 1551241 Query 517963 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 518022 |||| |||| | || | || | |||||| || | | | | || | || Sbjct 1551242 CTGAT----ATCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCG 1551297 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 |||||||||||||| || ||||| | ||||| |||| || | | | || | || | Sbjct 1551298 GTTATCAAAATCTTCTCCACCCAAGTGAGTATCACCTGCAGTGGATTTCACCTCAAAGAT 1551357 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||||| || | || || || | |||||| ||| ||||| || | ||||| ||||| Sbjct 1551358 GCCATCCTCGATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAG 1551417 Query 518143 TACATTCATTTC 518154 || ||| |||| Sbjct 1551418 AACGTTCCTTTC 1551429 Score = 104 bits (114), Expect = 2e-16 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || ||||||||||| |||||| |||| | || || ||||| ||||||| Sbjct 1552543 CAAAGACTGTGTTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCATCACCAATCAACC 1552602 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | ||| || ||| || || || ||||| || ||||| |||| Sbjct 1552603 TCTCTGTGTCTGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCATTGGCAA 1552662 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | || || || || |||| ||| ||||||| ||||| | | || || || | ||||| Sbjct 1552663 TGATCTCCACCTTCCCATGTTGGAATACACCAACACAGGAATAGGTGGTGCCAAGATCAA 1552722 Query 518703 TACCAATAGC 518712 | || | ||| Sbjct 1552723 TTCCGACAGC 1552732 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || |||||||| |||| |||||||||||| || || || ||||||| | || Sbjct 1551534 TTCTTGTCCAGACCATAAGCAATAGCAGCAGCAGTCGGCTCGTTGATAATTCGGAGTACG 1551593 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || || || |||| |||||||| || || || | || || || || ||||| Sbjct 1551594 TTGAGCCCTGCGATAGTTCCAGCATCTTTTGTAGCCTGGCGCTGGGAGTCATTGAAATAG 1551653 Query 518285 GCAGGAACAGTAATAACGGC 518304 || || ||||| | ||| || Sbjct 1551654 GCTGGTACAGTGACAACAGC 1551673 >seq1206 Length=7854729 Score = 105 bits (116), Expect = 5e-17 Identities = 279/417 (67%), Gaps = 8/417 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||| | || || || |||||||| ||||| | ||||| ||||| || || || ||||| Sbjct 7504500 GCACTGACGTTCAGGATACCATTTGCATCTATGTCAAAAGTGACCTCGATCTGGGGGACT 7504559 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | || || ||||| || | || ||| | ||||| || || || || Sbjct 7504560 CCACGGGGCGCTGGGGGGATGCCCGTTAGATCAAACTTGCCCAGCAAGTTGTTGTCCTTT 7504619 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 517436 || | | |||||||| || | |||| || | ||| | | || || || || | Sbjct 7504620 GTCATAGCCCTCTCACCCTCAAACACCTGGACCAGGACACTGC--TCTGGTTGTCCGAGT 7504677 Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || ||||| ||| ||| ||| || || ||||| | | || | | | Sbjct 7504678 AGGTGGTGAAGG-TCTGGGTTTGTTTGGTAGGGATGGTAGTGTTACGCTTGATGAGAGCG 7504736 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||||| ||||| || | || || || ||||| |||||||| | |||| Sbjct 7504737 GTCATCACTCCACCAGCTGTCTCAATGCCCAGGGACAGAGGCGTGACATCCAACAGGAGC 7504796 Query 517556 ATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 517614 | || || | || || | | || | || | || ||||||||||| | |||||| || Sbjct 7504797 AGATCCTGCACGTTCTC-TGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGCC 7504855 Query 517615 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 517671 ||| |||||||||||||| ||||| | | | || || | ||| |||||||| || Sbjct 7504856 ATAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAA 7504912 >seq2135 Length=2661649 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | |||||||| ||||| || ||||| ||||| | | ||||| Sbjct 1250655 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAGGCGGATATCCGGAAGGTTAT 1250714 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 1250715 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 1250774 Query 367113 TGATGG 367118 |||||| Sbjct 1250775 TGATGG 1250780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780479254921990