Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1206 259 6e-64 seq1079 212 8e-50 >seq1206 Length=7854729 Score = 259 bits (286), Expect = 6e-64 Identities = 1035/1606 (64%), Gaps = 50/1606 (3%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || || || ||||| ||||| |||||||| || || Sbjct 7504379 TTCATCCTCTGCTTTGTATTTCTCTGCTTCTTGCACCATGCGATCAATGTCATCCTTGCT 7504438 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | |||||| ||||| || ||||| ||||| | ||| |||| | ||| || | Sbjct 7504439 GAGGCGCCCCTTGTCATTGGTGATCGTGATCTTGTTCTCTTTTCCCGTGCTCTTGTCCAC 7504498 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 |||||| || |||| |||||||||||||| | || || | || | | | ||| | Sbjct 7504499 AGCACTGACGTTCAGGATACCATTTGCATCTATGTCAAAAGTGACCTCGA--TCTGGGGG 7504556 Query 6748 ACCCCTCGGTGCG--GCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCC 6805 || || ||| ||| | || || ||||||| |||||| | || || || |||| ||| Sbjct 7504557 ACTCCACGGGGCGCTGGGGGGATGCCCGTTAGATCAAACTTGCCCAGCAAGTTGTTGTCC 7504616 Query 6806 GTCGCCTTCTTACGTTCACCTTCATAGACTTTAA--TTGTCACCGCAGGTTGATTATCTT 6863 | | | | | ||||| ||| | || | | | ||| || || || || Sbjct 7504617 TTTGTCATAGCCCTCTCACCCTCAAACACCTGGACCAGGACACTGC--TCTGGTTGTCCG 7504674 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 || | |||| | || || || | || || || || || | | || | | Sbjct 7504675 AGTAGGTGGTGAAGGTCTGGGTTTGTTTGGTAGGGATGGTAGTGTTACGCTTGATGAGAG 7504734 Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983 |||||| | ||||| || || | || || |||||||| || || ||||| || | Sbjct 7504735 CGGTCATCACTCCACCAGCTGTCTCAATGCCCAGGGACAGAGGCGTGACATCCAACAGGA 7504794 Query 6984 ACAGGTCTTGAACAGATTCGTTCCCT--TCACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 ||| || || || ||| | || || ||| | | ||| || ||||| || | || Sbjct 7504795 GCAGATCCTG--CACGTTCTCTGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGC 7504852 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 || || || || || ||||| || || || | || || || ||||| || || || | Sbjct 7504853 GCCATAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAA 7504912 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||| | || | || || || ||||| || || || ||||| || | || || || Sbjct 7504913 GTCCTGCAGCAGCTTCTGGATCTTGGGGATGCGCGTGGAGCCACCCACTAGCACTATCTC 7504972 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 | | | || || | || | || || || | || || || || |||| Sbjct 7504973 CTGGATCTGACCCTTGTCTAGTTTGGCATCACGCAGGGCCTTCTCCACTGGCTCCAGCGT 7505032 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 |||||| | || | || |||||||| || ||||| |||||||| || ||||| Sbjct 7505033 GCCACGGAAGAGATCAGCATTGAGCTCCTCAAAGCGGGCACGAGTAATGGAGGTGTAGAA 7505092 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAA 7338 |||| ||| ||||| | ||| || || || ||| | | ||| || ||||| | Sbjct 7505093 GTCAATGCCCTCGTAGAGCGAGTCGATCTCGATGCTAGCTTG---GGTGGAAGAGCTGAG 7505149 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || ||||| || | |||||| || || || | || | | |||||| || || | Sbjct 7505150 AGTACGCTTAGCCCTCTCACAAGCGGTACGCAGCCGCCTCACTGCACGCTTATTGCCAGC 7505209 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTC-AGAGAAGTGTCGA--AGGAGTCTCGA 7455 ||| || ||| || |||||||| |||||||| | | || || | | | | | Sbjct 7505210 AATGTCACGCTTGTGCTTACGTTTGAACTCTTCTACAAAATGGTTCACCATGCGGTT--- 7505266 Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 || || || || ||||||| || ||||| || || || | || || |||||||| || Sbjct 7505267 GTCAAAGTCCTCCCCACCCAGATGGGTATCACCAGCTGTGGACTTCACCTCAAAGATGCC 7505326 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | | || ||||| || || || || |||| |||||| ||||| || Sbjct 7505327 ATCCTCAATGGTGAGGATGGACACATCGAAAGTGCCCCCTCCCAAGTCAAAGATGAGCAC 7505386 Query 7576 GTTCGTATCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 |||| | || | | | ||||| || | || ||||| ||||| || || || Sbjct 7505387 GTTCTTCTCCCCAGCCCGGGTACCTTTCTTGTCCAAGCCATACGCTATAGCAGCTGCTGT 7505446 Query 7630 TGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 || ||||| || ||||| | ||| || ||||||| || || | |||||||| || | Sbjct 7505447 GGGCTCATTGATGATACGCATCACA-TTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGG 7505505 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCT 7748 | || || || || || || ||||| || || || || | ||| || | | || || Sbjct 7505506 CCTGGCGCTGGGAGTCATTGAAGTAAGCAGGCACTGTGATGACAGCATTCTGCACCTTGC 7505565 Query 7749 TACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTT 7808 || || || | || || || || ||||| |||||||| ||||| || ||||| | Sbjct 7505566 GGCCCAGGTAGGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCT 7505625 Query 7809 CAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCA 7867 | | | | | || ||| | || || || | || |||| | | |||| || || Sbjct 7505626 CTG-GGAAGAAGGTCTTCATCTCCCCCTTGTACTCCACTTGCACCTTGGGCTT----GC- 7505679 Query 7868 GCACCGGGGATAACC---TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG-TC 7923 |||| | | ||| ||| ||| | ||||| || || ||| || || || Sbjct 7505680 -CACCTTCGTTCACCACTCGGAACGGCCAGTGCTTCATGTCCGACTGCACC-GTGGGATC 7505737 Query 7924 CGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGC 7983 |||| | || || |||||||| |||||||| | ||||| | |||||||| || Sbjct 7505738 ATCGTACTTGCGGCCAATGAGACGCTTAGCATCAAAGATGGTGTTGGTAGGGTTCATAGC 7505797 Query 7984 TGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTA 8043 | |||||||| || || || ||||| ||||| || || || ||||| || || || Sbjct 7505798 TACCTGGTTCTTGGCAGCATCACCGATGAGACGCTCGGTA---TCGGTAAAGGCCACATA 7505854 Query 8044 CGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCC 8102 | |||| || || || || || ||||| || || || || || || | | | || Sbjct 7505855 -GCTGGGCGTGGTGCGGTTGCCCTGGTCATTGGCGATGATCTCCACTTTGCCATGCTGGA 7505913 Query 8103 AGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||| || ||||| |||||||| || || || || || ||||| || Sbjct 7505914 AGACACCCACGCAGGAATACGTGGTGCCCAAGTCGATGCCGATCGC 7505959 >seq1079 Length=2839117 Score = 212 bits (234), Expect = 8e-50 Identities = 377/546 (69%), Gaps = 12/546 (2%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 ||||| || || || || ||||| || || || | || |||| ||||| || || || Sbjct 1550885 GCCCCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAACTCTTTGCCATTGAAG 1550944 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || || ||||| || ||||| || || || ||||| ||||| ||||| Sbjct 1550945 AAGTCCTGCAGCAGTTTCTGAATCTTTGGGATACGAGTAGACCCACCAACCAACACGATG 1551004 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA-- 7217 || | | | |||||| || | || | || || || | ||||| ||||| |||| Sbjct 1551005 TCGTGGATCTGCGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAGG 1551064 Query 7218 -TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 ||| |||||||| ||| | ||| || ||||| || || | ||||||||| || Sbjct 1551065 GTACC---ACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGACGTG 1551121 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336 ||||| |||| ||| || || | |||||||||||||| | | || | | ||||| Sbjct 1551122 TAGAAGTCAATGCCCTCATAGAGAGAATCAATTTCAATACTGGCCTGAGTGCTAGAAGAG 1551181 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 | || |||||||| || ||||| || || || | ||||||| || | | ||| || Sbjct 1551182 AGGGTACGCTTTGCACGTTCACATGCAGTGCGCAGGCGACGAACTGCTCTCTTGTTCTCG 1551241 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTC 7453 ||||||||||| || || || || || || | ||||| || || | | | | Sbjct 1551242 CTGATATCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCGGTT- 1551300 Query 7454 GAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATA 7513 ||| |||||||| ||||||||||| ||||| || || || | ||| || |||||||| Sbjct 1551301 --ATCAAAATCTTCTCCACCCAAGTGAGTATCACCTGCAGTGGATTTCACCTCAAAGATG 1551358 Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 || | || || | | | || |||||||| || ||||| || |||||||| || || Sbjct 1551359 CCATCCTCGATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAGA 1551418 Query 7574 ACGTTC 7579 |||||| Sbjct 1551419 ACGTTC 1551424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635077900708600