Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq551 152 1e-31 seq1011 131 4e-25 >seq551 Length=8489217 Score = 152 bits (168), Expect = 1e-31 Identities = 167/221 (76%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || |||| ||| ||||||||||| || || || ||||| |||| || || | |||||| Sbjct 2123992 CAGAACATTGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 2124051 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| |||||||| || || ||||| || | || ||||| |||||||||||||| ||||| Sbjct 2124052 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 2124111 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAAC 195104 || || || ||| ||||||||||||||||| ||| || || || ||||| | Sbjct 2124112 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGAT 2124168 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATG 195145 ||||| |||||||| || || || || | ||||||| || Sbjct 2124169 GGTCTTCCCTGTCAAGGTCTTCACAAAGATCTGCATTTTTG 2124209 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||||||||| || || || ||||| |||| || || | ||||||||| Sbjct 2123312 ACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 2123371 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| |||||||||||||| ||||| || Sbjct 2123372 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 2123431 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||||||||||| ||| || || || ||||| | ||| Sbjct 2123432 ATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTC 2123488 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 2123489 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123520 Score = 143 bits (158), Expect = 6e-29 Identities = 162/213 (76%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 |||||||| ||||||||||| || || || ||||| |||| |||| || | ||||||||| Sbjct 2123768 ACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGCCCATCTTC 2123826 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || | || ||||| |||||||||||||| ||||| || Sbjct 2123827 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 2123886 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || || ||| ||||||||||||||||| ||| || || || ||||| | || Sbjct 2123887 GATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGT 2123943 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||| || || || || | ||||| Sbjct 2123944 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123976 Score = 136 bits (150), Expect = 9e-27 Identities = 155/207 (75%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||| || || || ||||| |||| || || | ||||||||| ||||| Sbjct 2123545 GTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 2123604 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || | || ||||| |||||||||||||| ||||| || || || Sbjct 2123605 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 2123664 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| ||||||||||||||||| ||| || || || ||||| | ||||| || Sbjct 2123665 GGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTCTTGCC 2123721 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 2123722 AGTCAGGGTCTTCACAAAGATCTGCAT 2123748 >seq1011 Length=3435084 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || | || || | ||||||||| Sbjct 2733952 ACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 2734011 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| ||||| || Sbjct 2734012 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGG 2734071 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| || || || ||||| | ||| Sbjct 2734072 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTC 2734128 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 2734129 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734160 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || | || || | ||||||||| Sbjct 2734180 ACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 2734239 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| ||||| || Sbjct 2734240 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGG 2734299 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| || || || ||||| | ||| Sbjct 2734300 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTC 2734356 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 2734357 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734388 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || | || || | ||||||||| Sbjct 2734408 ACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 2734467 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| ||||| || Sbjct 2734468 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGG 2734527 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| || || || ||||| | ||| Sbjct 2734528 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTC 2734584 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 2734585 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734616 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || | || || | ||||||||| Sbjct 2734636 ACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 2734695 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| ||||| || Sbjct 2734696 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGG 2734755 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| || || || ||||| | ||| Sbjct 2734756 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTC 2734812 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 2734813 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109383301663805