Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1573 129 7e-25 seq1728 107 2e-18 seq860 89.7 6e-13 >seq1573 Length=591436 Score = 129 bits (142), Expect = 7e-25 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 18980 GTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttt 19039 || |||| ||||| || || | |||||||||||| || | |||||||| | |||||||| Sbjct 537417 GTACCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 537476 Query 19040 tttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAA 19099 | || | ||| || || || |||||||| ||||||||||| || ||||| |||||||||| Sbjct 537477 TCTTCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAA 537536 Query 19100 AAGCAACTAGTCTTTCTCC 19118 |||| |||| | |||||| Sbjct 537537 AAGCTACTACACGTTCTCC 537555 >seq1728 Length=2076782 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | ||||||||||| ||||| || | Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423 Query 19103 CAAC 19106 |||| Sbjct 1517422 CAAC 1517419 >seq860 Length=330425 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/155 (73%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 47902 CAGCTACCTCAT--TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTT 47959 || ||||||||| ||| | ||||| | | |||||| | ||| || || | ||||| Sbjct 178919 CACCTACCTCATCGTTGC--TGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTT 178976 Query 47960 GATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAA 48019 |||||| ||||| || || ||||| | ||| || | ||| ||||| ||||| | Sbjct 178977 GATAGTTCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAGGAGTCTTTGTACAGCATGTA 179036 Query 48020 AGGTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 ||| || ||||| ||| |||||||||| ||||||| Sbjct 179037 AGGGGTGCCAGTCTCTGTCTGAGATTCGATGATAG 179071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562060212720600