Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1573 129 7e-25
seq1728 107 2e-18
seq860 89.7 6e-13
>seq1573
Length=591436
Score = 129 bits (142), Expect = 7e-25
Identities = 112/139 (81%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 18980 GTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttt 19039
|| |||| ||||| || || | |||||||||||| || | |||||||| | ||||||||
Sbjct 537417 GTACCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 537476
Query 19040 tttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAA 19099
| || | ||| || || || |||||||| ||||||||||| || ||||| ||||||||||
Sbjct 537477 TCTTCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAA 537536
Query 19100 AAGCAACTAGTCTTTCTCC 19118
|||| |||| | ||||||
Sbjct 537537 AAGCTACTACACGTTCTCC 537555
>seq1728
Length=2076782
Score = 107 bits (118), Expect = 2e-18
Identities = 98/124 (79%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || || || | ||||||||||| ||||| || |
Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| |
Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423
Query 19103 CAAC 19106
||||
Sbjct 1517422 CAAC 1517419
>seq860
Length=330425
Score = 89.7 bits (98), Expect = 6e-13
Identities = 113/155 (73%), Gaps = 4/155 (3%)
Strand=Plus/Plus
Query 47902 CAGCTACCTCAT--TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTT 47959
|| ||||||||| ||| | ||||| | | |||||| | ||| || || | |||||
Sbjct 178919 CACCTACCTCATCGTTGC--TGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTT 178976
Query 47960 GATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAA 48019
|||||| ||||| || || ||||| | ||| || | ||| ||||| ||||| |
Sbjct 178977 GATAGTTCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAGGAGTCTTTGTACAGCATGTA 179036
Query 48020 AGGTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054
||| || ||||| ||| |||||||||| |||||||
Sbjct 179037 AGGGGTGCCAGTCTCTGTCTGAGATTCGATGATAG 179071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562060212720600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |