Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1079 120 2e-21
seq1206 109 4e-18
>seq1079
Length=2839117
Score = 120 bits (132), Expect = 2e-21
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
|||||| | || || | ||||||||||| ||||| |||||||| || || || |||||
Sbjct 1551682 GTTACGAACGCTGTTGTCACTGTACCAGCCTATTTCAATGACTCCCAGCGCCAGGCTACA 1551623
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||||||| ||| || || || || || || || |||||||| || || ||||||
Sbjct 1551622 AAAGATGCTGGAACTATCGCAGGGCTCAACGTACTCCGAATTATCAACGAGCCGACTGCT 1551563
Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536
||||| |||| ||||| || || ||
Sbjct 1551562 GCTGCTATTGCTTATGGTCTGGACAA 1551537
Score = 96.9 bits (106), Expect = 3e-14
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 549970 AGATATAATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGT 550029
||||| |||||| || | |||| | || || ||| | || ||||| ||| |||||
Sbjct 1552754 AGATAAAATGTCGAAGGGACCAGCTGTCGGAATTGATCTTGGCACCACCTATTCCTGTGT 1552695
Query 550030 TGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTAC 550089
|||||| | ||| |||| || || || || ||||||||||| || |||||| | || ||
Sbjct 1552694 TGGTGTATTCCAACATGGGAAGGTGGAGATCATTGCCAATGACCAGGGTAACCGGACCAC 1552635
Query 550090 TCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149
||| || ||| | ||||| || || || || |||||||||| ||||| | ||
Sbjct 1552634 GCCAAGCTACGTTGCCTTCACAGACACAGAGAGGTTGATTGGTGATGCTGCAAAGAACCA 1552575
Query 550150 AG--CCACTGGTAATCCTACCAATACTATTTTTG 550181
|| || || ||||| ||||| || | ||||
Sbjct 1552574 AGTTGCAATG--AATCCAACCAACACAGTCTTTG 1552543
Score = 89.7 bits (98), Expect = 4e-12
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|||||||| |||||||| | || |||||||| |||||||| || || ||||||||||||
Sbjct 1549936 GGTATTCCCCCTGCTCCCAGAGGTGTACCGCAGATTGAAGTAACCTTTGATATCGATGCC 1549877
Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598
||||| || |||| ||| ||||| |||||
Sbjct 1549876 AATGGCATCCTGAACGTGTCTGCTGTGGATAA 1549845
>seq1206
Length=7854729
Score = 109 bits (120), Expect = 4e-18
Identities = 354/543 (65%), Gaps = 5/543 (1%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| || || || || || || ||||| ||| || || ||||| | || |||| |||
Sbjct 7505959 GCGATCGGCATCGACTTGGGCACCACGTATTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 7505900
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
|| || || || |||||||| || || ||| | || || || ||||| | || ||
Sbjct 7505899 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTTACC 7505840
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || || | | | | |||||||| || || | || | || || ||||||||
Sbjct 7505839 GATACCGAGCGTCTCATCGGTGATGCTGCCAAGAACCAGGTAGCTATGAACCCTACCAAC 7505780
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| || ||||||||||| ||| | ||||| | | | ||||| | || || ||| |
Sbjct 7505779 ACCATCTTTGATGCTAAGCGTCTCATTGGCCGCAAGTACGATGATCCCACGGTGCAGTCG 7505720
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290
|| |||||||| ||||| |||| | | || || | ||| || || | | |||
Sbjct 7505719 GACATGAAGCACTGGCCGTTCCGAGTGGTGAACGAAGGTGGCAAGCCCAAGGTGCAAGTG 7505660
Query 550291 TACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349
| | || | ||| || | || | ||| ||||| | || || ||||| | |
Sbjct 7505659 GAGTACAAGGGGGAGATG-AAGACCTTCTTC-CCAGAGGAGATCAGCTCCATGGTCCTTA 7505602
Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409
|| ||||| | | || || | | || | | || | |||| || || |
Sbjct 7505601 CCAAGATGAAGGAGATTGCTGAGGCCTACCTGGGCCGCAAGGTGCAGAATGCTGTCATCA 7505542
Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469
| || || || || || |||||||| || || || || || ||||||||||| ||
Sbjct 7505541 CAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCATCA 7505482
Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529
|||| |||||||| | ||||| |||||||| || || || ||||| | || ||||| |
Sbjct 7505481 CTGGCCTTAATGTGATGCGTATCATCAATGAGCCCACAGCAGCTGCTATAGCGTATGG-C 7505423
Query 550530 TTG 550532
|||
Sbjct 7505422 TTG 7505420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028930303613350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |