Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1079 120 2e-21 seq1206 109 4e-18 >seq1079 Length=2839117 Score = 120 bits (132), Expect = 2e-21 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 |||||| | || || | ||||||||||| ||||| |||||||| || || || ||||| Sbjct 1551682 GTTACGAACGCTGTTGTCACTGTACCAGCCTATTTCAATGACTCCCAGCGCCAGGCTACA 1551623 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||| || || || || || || || |||||||| || || |||||| Sbjct 1551622 AAAGATGCTGGAACTATCGCAGGGCTCAACGTACTCCGAATTATCAACGAGCCGACTGCT 1551563 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| ||||| || || || Sbjct 1551562 GCTGCTATTGCTTATGGTCTGGACAA 1551537 Score = 96.9 bits (106), Expect = 3e-14 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 549970 AGATATAATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGT 550029 ||||| |||||| || | |||| | || || ||| | || ||||| ||| ||||| Sbjct 1552754 AGATAAAATGTCGAAGGGACCAGCTGTCGGAATTGATCTTGGCACCACCTATTCCTGTGT 1552695 Query 550030 TGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTAC 550089 |||||| | ||| |||| || || || || ||||||||||| || |||||| | || || Sbjct 1552694 TGGTGTATTCCAACATGGGAAGGTGGAGATCATTGCCAATGACCAGGGTAACCGGACCAC 1552635 Query 550090 TCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 ||| || ||| | ||||| || || || || |||||||||| ||||| | || Sbjct 1552634 GCCAAGCTACGTTGCCTTCACAGACACAGAGAGGTTGATTGGTGATGCTGCAAAGAACCA 1552575 Query 550150 AG--CCACTGGTAATCCTACCAATACTATTTTTG 550181 || || || ||||| ||||| || | |||| Sbjct 1552574 AGTTGCAATG--AATCCAACCAACACAGTCTTTG 1552543 Score = 89.7 bits (98), Expect = 4e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || |||||||| |||||||| || || |||||||||||| Sbjct 1549936 GGTATTCCCCCTGCTCCCAGAGGTGTACCGCAGATTGAAGTAACCTTTGATATCGATGCC 1549877 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || |||| ||| ||||| ||||| Sbjct 1549876 AATGGCATCCTGAACGTGTCTGCTGTGGATAA 1549845 >seq1206 Length=7854729 Score = 109 bits (120), Expect = 4e-18 Identities = 354/543 (65%), Gaps = 5/543 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || ||||| ||| || || ||||| | || |||| ||| Sbjct 7505959 GCGATCGGCATCGACTTGGGCACCACGTATTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 7505900 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| || || ||| | || || || ||||| | || || Sbjct 7505899 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTTACC 7505840 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | | |||||||| || || | || | || || |||||||| Sbjct 7505839 GATACCGAGCGTCTCATCGGTGATGCTGCCAAGAACCAGGTAGCTATGAACCCTACCAAC 7505780 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || ||||||||||| ||| | ||||| | | | ||||| | || || ||| | Sbjct 7505779 ACCATCTTTGATGCTAAGCGTCTCATTGGCCGCAAGTACGATGATCCCACGGTGCAGTCG 7505720 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 || |||||||| ||||| |||| | | || || | ||| || || | | ||| Sbjct 7505719 GACATGAAGCACTGGCCGTTCCGAGTGGTGAACGAAGGTGGCAAGCCCAAGGTGCAAGTG 7505660 Query 550291 TACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || | ||| || | || | ||| ||||| | || || ||||| | | Sbjct 7505659 GAGTACAAGGGGGAGATG-AAGACCTTCTTC-CCAGAGGAGATCAGCTCCATGGTCCTTA 7505602 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 || ||||| | | || || | | || | | || | |||| || || | Sbjct 7505601 CCAAGATGAAGGAGATTGCTGAGGCCTACCTGGGCCGCAAGGTGCAGAATGCTGTCATCA 7505542 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || || || || |||||||| || || || || || ||||||||||| || Sbjct 7505541 CAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCATCA 7505482 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| |||||||| | ||||| |||||||| || || || ||||| | || ||||| | Sbjct 7505481 CTGGCCTTAATGTGATGCGTATCATCAATGAGCCCACAGCAGCTGCTATAGCGTATGG-C 7505423 Query 550530 TTG 550532 ||| Sbjct 7505422 TTG 7505420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028930303613350