Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1573 134 2e-26 seq1728 98.7 1e-15 >seq1573 Length=591436 Score = 134 bits (148), Expect = 2e-26 Identities = 107/129 (83%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||||||||| || | ||| |||||||| |||||||| || Sbjct 537422 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 537481 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | |||||| |||| |||||| || ||||||||||| || ||||| ||||||||||| ||| Sbjct 537482 AGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 537541 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 537542 ACTACACGT 537550 >seq1728 Length=2076782 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| || || || | ||| ||||| | ||||| || || Sbjct 1517540 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 1517481 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||||||||| || ||||| || || |||||||| || ||||||||||| ||||| || Sbjct 1517480 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGGCA 1517421 Query 37320 AC 37321 || Sbjct 1517420 AC 1517419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592265601616600