Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq562 113 4e-20 >seq562 Length=6874971 Score = 113 bits (124), Expect = 4e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 |||||| ||||| || || |||||||| ||||| || || |||||||| || || ||||| Sbjct 2708904 TAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAGGG 2708845 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 || || || ||||| || || |||||||||||||| || || || | || || | Sbjct 2708844 CACTCCTAGTCCCATATCTCCAGACCTCTGGTAGAGTTGGCAAGATAATTCACCATTTAG 2708785 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| |||||||| | | ||||| ||||| | |||||| || Sbjct 2708784 AACGTAGAACTGACAAAGAGCATGGCATGGAGGCAAAGCCATCAG 2708740 Score = 100 bits (110), Expect = 2e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || || |||||||||||||| || || | ||||||| || Sbjct 2705265 CATATCTTTGTATTCTGCCCCAAAGTGCCTCCACTGGAAACCATAAATAGGTCCCAAATC 2705206 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 |||||||| || | ||| ||| ||| |||| || || | || || ||||| || Sbjct 2705205 CCCCTCTTCTCTTTTGCAGAAACCCTGCTTATCCAGGAACTCACGTGACCCATTGGCATC 2705146 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||| ||||| || ||||| | ||||| ||||||| ||||| || || Sbjct 2705145 CCAAATCTTCACGCCCTTTGCAGAGAGTTCTTTGGCATTTGTAGAACC 2705098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408583163113295