Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1079 104 2e-16 seq2082 89.7 3e-12 seq419 87.8 1e-11 >seq1079 Length=2839117 Score = 104 bits (114), Expect = 2e-16 Identities = 223/328 (68%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||| ||||||||||| ||||| | || |||||| ||||| | | | ||||| || Sbjct 1551210 ACTGCATGTGAACGTGCAAAGCGTACCCTCTCTTCTAGCACTCAGGCCAGTATTGAAATT 1551151 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || ||||| || ||| |||||||| Sbjct 1551150 GATTCTCTCTATGAGGGCATTGACTTCTACACGTCCATTACCAGAGCTCGCTTTGAAGAG 1551091 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || ||| | | || | ||| | Sbjct 1551090 CTGAATGCTGACCTGTTCCGTGGTACCCTGGATCCTGTGGAAAAGGCCCTGCGGGATGCC 1551031 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| |||||||| || |||| || || || | || || || || || | || ||| Sbjct 1551030 AAACTAGACAAATCGCAGATCCACGACATCGTGTTGGTTGGTGGGTCTACTCGTATCCCA 1550971 Query 475736 AA-AATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || | | ||| || ||| | || | | || ||||| ||| |||| || | || | | Sbjct 1550970 AAGATTCAGA-AACTGC-TGCAGGACTTCTTCAATGGCAAAGAGTTGAACAAGAGCATCA 1550913 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||||||||| || ||||| || Sbjct 1550912 ATCCTGATGAAGCTGTGGCTTATGGGGC 1550885 Score = 96.9 bits (106), Expect = 2e-14 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 474518 GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGT 474577 ||||| ||| | |||||||| |||| ||||||||| | |||||| ||||||||| Sbjct 1551987 GATGCAAAACGGTTGATTGGGCGTAGATTTGATGATTCTGTTGTCCAGTCTGATATGAAG 1551928 Query 474578 CATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGAAGCAATACACG 474635 || |||||||| | ||| | || | || ||| | |||| | | || | | |||| Sbjct 1551927 CACTGGCCTTTCACTGTGGTGAACGATGCTGGCAGACCAAAAGTCCAGGTGGAGTACAA- 1551869 Query 474636 CAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGA 474695 ||| || || || || | || || |||||||||||||||||||| ||||||||| Sbjct 1551868 -AGGAGAGACCAAGAGCTTCTATCCAGAGGAAATTTCTTCAATGGTTTTAACCAAAATGA 1551810 Query 474696 AACAAACCGCGAGCTCATATCTTGGA 474721 | ||| || ||||||||||| Sbjct 1551809 AGGAAATTGCAGAAGCATATCTTGGA 1551784 Score = 93.3 bits (102), Expect = 3e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| ||||| ||||| ||||| || || || || || || |||||||| |||| || Sbjct 1551664 ACTGTACCAGCCTATTTCAATGACTCCCAGCGCCAGGCTACAAAAGATGCTGGAACTATC 1551605 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 ||||| || || || | || ||||| || || || || || || || ||||||||||| Sbjct 1551604 GCAGGGCTCAACGTACTCCGAATTATCAACGAGCCGACTGCTGCTGCTATTGCTTATGGT 1551545 Query 474866 CTTGATAAGAA 474876 || || ||||| Sbjct 1551544 CTGGACAAGAA 1551534 Score = 86.0 bits (94), Expect = 4e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || || || |||||||| || |||||||| ||||| Sbjct 1549936 GGTATTCCCCCTGCTCCCAGAGGTGTACCGCAGATTGAAGTAACCTTTGATATCGATGCC 1549877 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || || || ||||| ||||| Sbjct 1549876 AATGGCATCCTGAACGTGTCTGCTGTGGATAA 1549845 >seq2082 Length=1176775 Score = 89.7 bits (98), Expect = 3e-12 Identities = 104/139 (75%), Gaps = 6/139 (4%) Strand=Plus/Plus Query 627753 ACAATAAGATTTATCACCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGAT 627812 ||| | ||| | |||||||| ||||| ||||| || |||||||||||||||||| || Sbjct 925999 ACAGTGAGACATTTCACCATCTCGTCCAGCTCTGCCAGATTCTTGATAATAACCTTCTAT 926058 Query 627813 ATTTTTAG---GTGCGCCATAATGTATTACTGCTCTCACATCTGATTTATTAATACCCAT 627869 | ||||| ||| | | ||| || || | ||||| | ||||| ||| ||||| Sbjct 926059 AGATTTAGGGAGTGAGGC---ATGGATAACATAGCGTACATCAGGTTTATCAATTCCCAT 926115 Query 627870 TCCAAATGCAATTGTTGCA 627888 |||||| |||||||||||| Sbjct 926116 TCCAAAGGCAATTGTTGCA 926134 >seq419 Length=7051706 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/124 (77%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 474778 TCAAGCAACTAAAGATGC-GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836 ||| || || |||||||| ||| ||| |||| || | |||||||| | | ||||||| Sbjct 1483925 TCAGGCTACAAAAGATGCTGGGCAGA-TTGCTGGCTTGAATGTTTTGAGGGTGATTAATG 1483983 Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATG 474896 ||||||||||||| |||||||| |||||||| || ||| | ||||||| |||| || Sbjct 1483984 AACCAACAGCAGCTGCACTTGCCTATGGTCTGGACAAGTCTGAAGACAAAG-TGTAAGTG 1484042 Query 474897 TTTT 474900 ||| Sbjct 1484043 CTTT 1484046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267882582098420