Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq1079 104 2e-16
seq2082 89.7 3e-12
seq419 87.8 1e-11
>seq1079
Length=2839117
Score = 104 bits (114), Expect = 2e-16
Identities = 223/328 (68%), Gaps = 4/328 (1%)
Strand=Plus/Minus
Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555
||||| ||||||||||| ||||| | || |||||| ||||| | | | ||||| ||
Sbjct 1551210 ACTGCATGTGAACGTGCAAAGCGTACCCTCTCTTCTAGCACTCAGGCCAGTATTGAAATT 1551151
Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615
|||||||| | ||| || ||||| | | || ||||| || ||| ||||||||
Sbjct 1551150 GATTCTCTCTATGAGGGCATTGACTTCTACACGTCCATTACCAGAGCTCGCTTTGAAGAG 1551091
Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675
| | |||| || || | || | || || || ||| | | || | ||| |
Sbjct 1551090 CTGAATGCTGACCTGTTCCGTGGTACCCTGGATCCTGTGGAAAAGGCCCTGCGGGATGCC 1551031
Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735
||||| |||||||| || |||| || || || | || || || || || | || |||
Sbjct 1551030 AAACTAGACAAATCGCAGATCCACGACATCGTGTTGGTTGGTGGGTCTACTCGTATCCCA 1550971
Query 475736 AA-AATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAA 475793
|| | | ||| || ||| | || | | || ||||| ||| |||| || | || | |
Sbjct 1550970 AAGATTCAGA-AACTGC-TGCAGGACTTCTTCAATGGCAAAGAGTTGAACAAGAGCATCA 1550913
Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821
|||||||||||||||| || ||||| ||
Sbjct 1550912 ATCCTGATGAAGCTGTGGCTTATGGGGC 1550885
Score = 96.9 bits (106), Expect = 2e-14
Identities = 146/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 474518 GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGT 474577
||||| ||| | |||||||| |||| ||||||||| | |||||| |||||||||
Sbjct 1551987 GATGCAAAACGGTTGATTGGGCGTAGATTTGATGATTCTGTTGTCCAGTCTGATATGAAG 1551928
Query 474578 CATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGAAGCAATACACG 474635
|| |||||||| | ||| | || | || ||| | |||| | | || | | ||||
Sbjct 1551927 CACTGGCCTTTCACTGTGGTGAACGATGCTGGCAGACCAAAAGTCCAGGTGGAGTACAA- 1551869
Query 474636 CAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGA 474695
||| || || || || | || || |||||||||||||||||||| |||||||||
Sbjct 1551868 -AGGAGAGACCAAGAGCTTCTATCCAGAGGAAATTTCTTCAATGGTTTTAACCAAAATGA 1551810
Query 474696 AACAAACCGCGAGCTCATATCTTGGA 474721
| ||| || |||||||||||
Sbjct 1551809 AGGAAATTGCAGAAGCATATCTTGGA 1551784
Score = 93.3 bits (102), Expect = 3e-13
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805
||||| ||||| ||||| ||||| || || || || || || |||||||| |||| ||
Sbjct 1551664 ACTGTACCAGCCTATTTCAATGACTCCCAGCGCCAGGCTACAAAAGATGCTGGAACTATC 1551605
Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865
||||| || || || | || ||||| || || || || || || || |||||||||||
Sbjct 1551604 GCAGGGCTCAACGTACTCCGAATTATCAACGAGCCGACTGCTGCTGCTATTGCTTATGGT 1551545
Query 474866 CTTGATAAGAA 474876
|| || |||||
Sbjct 1551544 CTGGACAAGAA 1551534
Score = 86.0 bits (94), Expect = 4e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
|||||||| |||||||||||||| || || || |||||||| || |||||||| |||||
Sbjct 1549936 GGTATTCCCCCTGCTCCCAGAGGTGTACCGCAGATTGAAGTAACCTTTGATATCGATGCC 1549877
Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181
||||| || || || || ||||| |||||
Sbjct 1549876 AATGGCATCCTGAACGTGTCTGCTGTGGATAA 1549845
>seq2082
Length=1176775
Score = 89.7 bits (98), Expect = 3e-12
Identities = 104/139 (75%), Gaps = 6/139 (4%)
Strand=Plus/Plus
Query 627753 ACAATAAGATTTATCACCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGAT 627812
||| | ||| | |||||||| ||||| ||||| || |||||||||||||||||| ||
Sbjct 925999 ACAGTGAGACATTTCACCATCTCGTCCAGCTCTGCCAGATTCTTGATAATAACCTTCTAT 926058
Query 627813 ATTTTTAG---GTGCGCCATAATGTATTACTGCTCTCACATCTGATTTATTAATACCCAT 627869
| ||||| ||| | | ||| || || | ||||| | ||||| ||| |||||
Sbjct 926059 AGATTTAGGGAGTGAGGC---ATGGATAACATAGCGTACATCAGGTTTATCAATTCCCAT 926115
Query 627870 TCCAAATGCAATTGTTGCA 627888
|||||| ||||||||||||
Sbjct 926116 TCCAAAGGCAATTGTTGCA 926134
>seq419
Length=7051706
Score = 87.8 bits (96), Expect = 1e-11
Identities = 96/124 (77%), Gaps = 3/124 (2%)
Strand=Plus/Plus
Query 474778 TCAAGCAACTAAAGATGC-GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836
||| || || |||||||| ||| ||| |||| || | |||||||| | | |||||||
Sbjct 1483925 TCAGGCTACAAAAGATGCTGGGCAGA-TTGCTGGCTTGAATGTTTTGAGGGTGATTAATG 1483983
Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATG 474896
||||||||||||| |||||||| |||||||| || ||| | ||||||| |||| ||
Sbjct 1483984 AACCAACAGCAGCTGCACTTGCCTATGGTCTGGACAAGTCTGAAGACAAAG-TGTAAGTG 1484042
Query 474897 TTTT 474900
|||
Sbjct 1484043 CTTT 1484046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267882582098420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |