Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq2134 251 8e-62 seq1682 170 2e-37 seq201 158 1e-33 >seq2134 Length=278093 Score = 251 bits (278), Expect = 8e-62 Identities = 610/918 (66%), Gaps = 7/918 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| |||| || || || |||||| || | ||| | Sbjct 143709 TGTGTCGCAAATACTCTTCCAAGCATTTCACAGCAAAAGGGTCAACATCAGTATTGAACT 143768 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || ||||| ||| || || ||||||| || |||||| || |||| Sbjct 143769 TATTAGCAAAGTAGTGGTG---GTTTTGCAGCATCCAGTTCAAGTCTCCTACTCCAAACA 143825 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || | | ||| | || |||| || ||||| | || ||||| | ||| | Sbjct 143826 CACAGACAGAGTGAACGTGAATCCCACTGCATGGTGGGTAGGGCGCACCTTTAGACACAT 143885 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 |||||||| ||||||||||||||||||||||||| | || | |||||| || || | Sbjct 143886 CACCTTCGAAGTACTGCCACTTCACAAACCTGGCCAGTGCATTCATGTCAGAAACATCAT 143945 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | || | | | ||| ||||| || || | || || | ||| | || ||||||| Sbjct 143946 ACTTATTACTGGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGGATTGTTGCCCACA 144005 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404 ||| || ||||||||||| ||||| || | |||||| || || |||| |||| Sbjct 144006 GGTACTCATCGGGGCTGTAAGTGTCTTTTGCCCATTCAATAAATGAAAGGATTTTGCTGT 144065 Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464 | | ||| || | |||| | |||||||| || || || || || || | Sbjct 144066 TTTCTAATATGTGTTCTACAAATCTTCTGCTAACGACAAAATAGGCACTACCAGAAAAAA 144125 Query 160465 TCGGTATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 | || | | ||| || ||| | |||||| || ||||| || || | Sbjct 144126 TTGGGGTACTGAGAGGTGGTCGT-TGTTTGTCTATGCCTGTGTTCTTTACTTTACCGTCA 144184 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCG-GTGGCATGCGTTCCGTCTC 160582 | | | | || |||| |||||||| | | |||| | | | ||||| ||| || || Sbjct 144185 ATAATCTCATGGTGCTTTTTCCACCTTA-CTTCTTTAGAGAGAGGCATTTTTTCTGTTTC 144243 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 | || || |||| | ||| | ||||||| || || || || |||| ||||| | Sbjct 144244 CAAGCTATTTTCACCTTTGAGGGCTTTCAGCCTCTCTACTATTTCCTGGTTGGTCTTAAT 144303 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 |||||||| | || || | |||||| | ||| ||||| || | || || || Sbjct 144304 AGGAAAGTCCATGCCACAGAGGTTTATTAAGTATTTCCACTTTGTACTTCTTCTGTAGAG 144363 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 || ||||||| ||||||||||||||||| | |||||||||||| || || || |||| Sbjct 144364 ATCTTTCATGCAGTTAATATCTGCCTGCACCCTGCTCCAGGAAGCATATACAACACTCTC 144423 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAA 160822 || | |||| | ||| || ||||| ||||| || || |||||| ||| || ||| Sbjct 144424 TAACTGGCTGGAAATAAAAACATTATCAAAACATGAAACTATTCCCTTCACAGCAGCAAA 144483 Query 160823 GAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 ||| | | |||| ||| || || | ||| || | |||||||| || ||||| Sbjct 144484 GAAGGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGAGCATAGAT 144543 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| | ||||| || || Sbjct 144544 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATATACCACTACTGAGTAAGCAAT 144603 Query 160943 CGGAAACTCGGTCTCCTC 160960 ||||| || | ||||| Sbjct 144604 TGGAAATTCTGCTTCCTC 144621 >seq1682 Length=19375980 Score = 170 bits (188), Expect = 2e-37 Identities = 549/834 (66%), Gaps = 35/834 (4%) Strand=Plus/Minus Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 |||| ||| | |||||||||| || ||||| ||| |||| || ||||| | || Sbjct 16301483 CCGGCGCCGTAGACGCAGACGGCGCGCTGGTGCAGGCCAGTGCAGGGTGGGTAGGGCGCG 16301424 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 || || ||| || || |||||||||||| || | | ||| || || | |||| Sbjct 16301423 CCCTTGCTGGTGTCGCCCTCCAGGTACTGCCACTTGACCAGGCGGGCCATGGCGTTCATG 16301364 Query 160272 TCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGT 160331 || ||| ||| | |||| | | || || || || || || |||||||| || | Sbjct 16301363 TCCGAGAGCTCGAACTTGTCGTTGTGCGGCACAGCCCCCGGCACACCGGGCATGCGGTTG 16301304 Query 160332 AGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT-C 160390 ||||||||||| | ||| |||||||||||||| |||||||| | ||| || | ||||| | Sbjct 16301303 AGGGTGGCCCAGACGTGCTCGTCGGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACTGC 16301244 Query 160391 TCCGATTAACCTG----TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGT 160446 | | | | || || | || ||||| || ||| | || | || | || Sbjct 16301243 TGC----ACCGTGGGGCTCTGGAAG-ACGTGCTCCACAAAGGCCCGCGTGGCCACGATGT 16301189 Query 160447 ACGCGCTGCCGGAGAATAT-CGGTATGGGTATAGGCGGCGTGTCTTTGT-CCTGACCG-G 160503 ||||| |||| | ||| || || | || | ||||||| ||||| | | || || Sbjct 16301188 ACGCGTTGCCCGTGAACATGGGGGAGCCGTGT-GGCGGCGGCTCTTTCTGCGTGGTCGTC 16301130 Query 160504 TGTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCG 160563 | ||| ||| | |||| ||| | | | ||||| || |||| | | Sbjct 16301129 CGGAAGA-TGAACT-GTGTCAC---TTTGTGGTGGTACCGCCACCGCTCCTGCTTGAGGG 16301075 Query 160564 GTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCA-GCTGCTTGACG 160622 || | |||| || | ||||| || | ||| |||| | ||| |||| Sbjct 16301074 CTGAGGGCCTCTCCGATTCGATGCTGTTCCGCCCCTGCAGCACCTTCAGGGTGC-GGACG 16301016 Query 160623 ATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCAT 160682 ||||| ||| ||||| | || |||||||| ||||| ||| | | ||| ||| Sbjct 16301015 ATCTCGGCGTTGGTCTTAATGGGGAAGTCGGTGCCGCAAGTGTTGAGGAGGTAGCGCCA- 16300957 Query 160683 TTCGCGCTCAGG----TCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCT 160738 | || | || | | |||||||| ||| || || | ||| ||||||| ||| Sbjct 16300956 ---GGGCACCGGACTCTGGAGCAGGTCCTGCATACAGTTCAGATCAGCCTGCAGCCGGGA 16300900 Query 160739 CCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGA 160798 |||||| ||||| || |||||||| || ||||||||||||||||| ||| || | Sbjct 16300899 CCAGGAGGCGTAGACCACGTTCTCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGCAGGC 16300840 Query 160799 CACGAT---TCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCAC 160855 |||| || ||| || || | ||| | || | ||| | ||||| ||| || Sbjct 16300839 AGCGATGGCTCGCACAGCCTCCTGGAAGGA-GGCT--GGGGACTTGCTGTCCATGTGGAC 16300783 Query 160856 GCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTT 160915 ||| || |||||||| || || ||||||| || || | ||||||||||||||| || || Sbjct 16300782 GCAGTAGAGGTTCTGGGGGGCATAGATGGACCGCAGGAGCCTCTCGAACATCTCGATTTT 16300723 Query 160916 ATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 | ||||| || || |||||||| || || ||||||| |||||| | ||||| Sbjct 16300722 GTCGTGGATGACCATGGAGTAGGCGATGGGGAACTCGGCCTCCTCCTGGCTCAG 16300669 >seq201 Length=732659 Score = 158 bits (174), Expect = 1e-33 Identities = 586/906 (65%), Gaps = 22/906 (2%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| |||| || || || |||||| || | ||| | Sbjct 136425 TGTGTCGCAAATACTCTTCCAAGCATTTCACAGCAAAAGGGTCAACATCAGTATTGAACT 136484 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || ||||| ||| || || ||||||| || |||||| || |||| Sbjct 136485 TATTAGCAAAGTAGTGGTG---GTTTTGCAGCATCCAGTTCAAGTCTCCTACTCCAAACA 136541 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || | | ||| | || |||| || ||||| | || ||||| | ||| | Sbjct 136542 CACAGACAGAGTGAACGTGAATCCCACTGCATGGTGGGTAGGGCGCACCTTTAGACACAT 136601 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 |||||||| ||||||||||||||||||||||||| | || | |||||| || || | Sbjct 136602 CACCTTCGAAGTACTGCCACTTCACAAACCTGGCCAGTGCATTCATGTCAGAAACATCAT 136661 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | || | | | ||| ||||| || || | || |||| ||| | || ||||||| Sbjct 136662 ACTTATTACTGGAAGAAACTGCACCTGGGACTTCAGGGATACTCTGAATTGTTGCCCACA 136721 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404 || || || |||||||| ||||| || | ||| || || || |||| |||| Sbjct 136722 AGTACTCATCAGGGCTGTAAGTGTCTTTTGGCCACTCAATAAATGAAAGGATTTTGCTGT 136781 Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464 | | ||| || | |||| | | |||||| || || || || || | | Sbjct 136782 -TTTCTAATAGTGTTCTACAAATCTTCTGCTAATGACAAAATAGGCACTACCAGAAACAA 136840 Query 160465 TCGGTATGGGTATAGGCGGCGTGTCTTTGTC-CTGACCGGTGTTAGACACCACTCCTTTC 160523 | || | | | | || | |||||| ||| || ||||| | || | Sbjct 136841 TTGGAGTACTGAGAAGTGGTCATTGTTTGTCTCTG-CCTGTGTTCTTTGCTTTACCATCA 136899 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || |||| |||||||| | | |||| | | ||||| ||| || || Sbjct 136900 ATAATCTCATGGTGCTTTTTCCACCTTA-CTTCTT-TAGAGAGGCATTTTTTCTGTTTCC 136957 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCT-TGACGATCTCTAGGTTCGTCTTGAG 160642 | ||||| |||| | || | ||||| | || ||| || || |||| ||||| | Sbjct 136958 AAGCTGTTTTCACCTTTAAGGGCTTTCAACCTCTCTGA-TATTTCCTGGTTGGTCTTAAT 137016 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 |||||||| | || || | |||||| | ||| ||||| || | || || || Sbjct 137017 AGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCACTTTGTACTTCTTCTGTAGAG 137076 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 || ||||||| ||||| ||||||| |||||| ||||| || || || ||| Sbjct 137077 ATCTTTCATGCAGTTAATGTCTGCCT-------GCTCCATGAAGCATATACAACACACTC 137129 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAA 160822 || | |||| | |||||| ||||| |||| || || |||||| ||| | ||| || Sbjct 137130 TAACTGGCTGGAAATAAAGACATTATCAGAACATGAAACTATTCCCTTCACAG-CAGCAA 137188 Query 160823 GAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGA 160881 || || | | |||| ||| || || | ||| || | |||||||| | |||| Sbjct 137189 AAAAGGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGAACATAGA 137248 Query 160882 TGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTA 160941 | | || || || || | |||||| || || |||| | ||| || ||||| || Sbjct 137249 TTGATCTTAG---TCTATCAAGCATCTCAATTTTGTGATAAACCACAATTGAGTAAGCAG 137305 Query 160942 TCGGAA 160947 | |||| Sbjct 137306 TTGGAA 137311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577169306615400