Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq2134 251 8e-62
seq1682 170 2e-37
seq201 158 1e-33
>seq2134
Length=278093
Score = 251 bits (278), Expect = 8e-62
Identities = 610/918 (66%), Gaps = 7/918 (1%)
Strand=Plus/Plus
Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104
||||||||| || || |||| |||| || || || |||||| || | ||| |
Sbjct 143709 TGTGTCGCAAATACTCTTCCAAGCATTTCACAGCAAAAGGGTCAACATCAGTATTGAACT 143768
Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164
|||| || || ||||| ||| || || ||||||| || |||||| || ||||
Sbjct 143769 TATTAGCAAAGTAGTGGTG---GTTTTGCAGCATCCAGTTCAAGTCTCCTACTCCAAACA 143825
Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224
| ||||| || | | ||| | || |||| || ||||| | || ||||| | ||| |
Sbjct 143826 CACAGACAGAGTGAACGTGAATCCCACTGCATGGTGGGTAGGGCGCACCTTTAGACACAT 143885
Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284
|||||||| ||||||||||||||||||||||||| | || | |||||| || || |
Sbjct 143886 CACCTTCGAAGTACTGCCACTTCACAAACCTGGCCAGTGCATTCATGTCAGAAACATCAT 143945
Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344
| || | | | ||| ||||| || || | || || | ||| | || |||||||
Sbjct 143946 ACTTATTACTGGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGGATTGTTGCCCACA 144005
Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404
||| || ||||||||||| ||||| || | |||||| || || |||| ||||
Sbjct 144006 GGTACTCATCGGGGCTGTAAGTGTCTTTTGCCCATTCAATAAATGAAAGGATTTTGCTGT 144065
Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464
| | ||| || | |||| | |||||||| || || || || || || |
Sbjct 144066 TTTCTAATATGTGTTCTACAAATCTTCTGCTAACGACAAAATAGGCACTACCAGAAAAAA 144125
Query 160465 TCGGTATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523
| || | | ||| || ||| | |||||| || ||||| || || |
Sbjct 144126 TTGGGGTACTGAGAGGTGGTCGT-TGTTTGTCTATGCCTGTGTTCTTTACTTTACCGTCA 144184
Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCG-GTGGCATGCGTTCCGTCTC 160582
| | | | || |||| |||||||| | | |||| | | | ||||| ||| || ||
Sbjct 144185 ATAATCTCATGGTGCTTTTTCCACCTTA-CTTCTTTAGAGAGAGGCATTTTTTCTGTTTC 144243
Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642
| || || |||| | ||| | ||||||| || || || || |||| ||||| |
Sbjct 144244 CAAGCTATTTTCACCTTTGAGGGCTTTCAGCCTCTCTACTATTTCCTGGTTGGTCTTAAT 144303
Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702
|||||||| | || || | |||||| | ||| ||||| || | || || ||
Sbjct 144304 AGGAAAGTCCATGCCACAGAGGTTTATTAAGTATTTCCACTTTGTACTTCTTCTGTAGAG 144363
Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762
|| ||||||| ||||||||||||||||| | |||||||||||| || || || ||||
Sbjct 144364 ATCTTTCATGCAGTTAATATCTGCCTGCACCCTGCTCCAGGAAGCATATACAACACTCTC 144423
Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAA 160822
|| | |||| | ||| || ||||| ||||| || || |||||| ||| || |||
Sbjct 144424 TAACTGGCTGGAAATAAAAACATTATCAAAACATGAAACTATTCCCTTCACAGCAGCAAA 144483
Query 160823 GAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882
||| | | |||| ||| || || | ||| || | |||||||| || |||||
Sbjct 144484 GAAGGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGAGCATAGAT 144543
Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942
| || || | || || | |||||| || || |||| | ||| | ||||| || ||
Sbjct 144544 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATATACCACTACTGAGTAAGCAAT 144603
Query 160943 CGGAAACTCGGTCTCCTC 160960
||||| || | |||||
Sbjct 144604 TGGAAATTCTGCTTCCTC 144621
>seq1682
Length=19375980
Score = 170 bits (188), Expect = 2e-37
Identities = 549/834 (66%), Gaps = 35/834 (4%)
Strand=Plus/Minus
Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211
|||| ||| | |||||||||| || ||||| ||| |||| || ||||| | ||
Sbjct 16301483 CCGGCGCCGTAGACGCAGACGGCGCGCTGGTGCAGGCCAGTGCAGGGTGGGTAGGGCGCG 16301424
Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271
|| || ||| || || |||||||||||| || | | ||| || || | ||||
Sbjct 16301423 CCCTTGCTGGTGTCGCCCTCCAGGTACTGCCACTTGACCAGGCGGGCCATGGCGTTCATG 16301364
Query 160272 TCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGT 160331
|| ||| ||| | |||| | | || || || || || || |||||||| || |
Sbjct 16301363 TCCGAGAGCTCGAACTTGTCGTTGTGCGGCACAGCCCCCGGCACACCGGGCATGCGGTTG 16301304
Query 160332 AGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT-C 160390
||||||||||| | ||| |||||||||||||| |||||||| | ||| || | ||||| |
Sbjct 16301303 AGGGTGGCCCAGACGTGCTCGTCGGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACTGC 16301244
Query 160391 TCCGATTAACCTG----TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGT 160446
| | | | || || | || ||||| || ||| | || | || | ||
Sbjct 16301243 TGC----ACCGTGGGGCTCTGGAAG-ACGTGCTCCACAAAGGCCCGCGTGGCCACGATGT 16301189
Query 160447 ACGCGCTGCCGGAGAATAT-CGGTATGGGTATAGGCGGCGTGTCTTTGT-CCTGACCG-G 160503
||||| |||| | ||| || || | || | ||||||| ||||| | | || ||
Sbjct 16301188 ACGCGTTGCCCGTGAACATGGGGGAGCCGTGT-GGCGGCGGCTCTTTCTGCGTGGTCGTC 16301130
Query 160504 TGTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCG 160563
| ||| ||| | |||| ||| | | | ||||| || |||| | |
Sbjct 16301129 CGGAAGA-TGAACT-GTGTCAC---TTTGTGGTGGTACCGCCACCGCTCCTGCTTGAGGG 16301075
Query 160564 GTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCA-GCTGCTTGACG 160622
|| | |||| || | ||||| || | ||| |||| | ||| ||||
Sbjct 16301074 CTGAGGGCCTCTCCGATTCGATGCTGTTCCGCCCCTGCAGCACCTTCAGGGTGC-GGACG 16301016
Query 160623 ATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCAT 160682
||||| ||| ||||| | || |||||||| ||||| ||| | | ||| |||
Sbjct 16301015 ATCTCGGCGTTGGTCTTAATGGGGAAGTCGGTGCCGCAAGTGTTGAGGAGGTAGCGCCA- 16300957
Query 160683 TTCGCGCTCAGG----TCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCT 160738
| || | || | | |||||||| ||| || || | ||| ||||||| |||
Sbjct 16300956 ---GGGCACCGGACTCTGGAGCAGGTCCTGCATACAGTTCAGATCAGCCTGCAGCCGGGA 16300900
Query 160739 CCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGA 160798
|||||| ||||| || |||||||| || ||||||||||||||||| ||| || |
Sbjct 16300899 CCAGGAGGCGTAGACCACGTTCTCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGCAGGC 16300840
Query 160799 CACGAT---TCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCAC 160855
|||| || ||| || || | ||| | || | ||| | ||||| ||| ||
Sbjct 16300839 AGCGATGGCTCGCACAGCCTCCTGGAAGGA-GGCT--GGGGACTTGCTGTCCATGTGGAC 16300783
Query 160856 GCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTT 160915
||| || |||||||| || || ||||||| || || | ||||||||||||||| || ||
Sbjct 16300782 GCAGTAGAGGTTCTGGGGGGCATAGATGGACCGCAGGAGCCTCTCGAACATCTCGATTTT 16300723
Query 160916 ATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969
| ||||| || || |||||||| || || ||||||| |||||| | |||||
Sbjct 16300722 GTCGTGGATGACCATGGAGTAGGCGATGGGGAACTCGGCCTCCTCCTGGCTCAG 16300669
>seq201
Length=732659
Score = 158 bits (174), Expect = 1e-33
Identities = 586/906 (65%), Gaps = 22/906 (2%)
Strand=Plus/Plus
Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104
||||||||| || || |||| |||| || || || |||||| || | ||| |
Sbjct 136425 TGTGTCGCAAATACTCTTCCAAGCATTTCACAGCAAAAGGGTCAACATCAGTATTGAACT 136484
Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164
|||| || || ||||| ||| || || ||||||| || |||||| || ||||
Sbjct 136485 TATTAGCAAAGTAGTGGTG---GTTTTGCAGCATCCAGTTCAAGTCTCCTACTCCAAACA 136541
Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224
| ||||| || | | ||| | || |||| || ||||| | || ||||| | ||| |
Sbjct 136542 CACAGACAGAGTGAACGTGAATCCCACTGCATGGTGGGTAGGGCGCACCTTTAGACACAT 136601
Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284
|||||||| ||||||||||||||||||||||||| | || | |||||| || || |
Sbjct 136602 CACCTTCGAAGTACTGCCACTTCACAAACCTGGCCAGTGCATTCATGTCAGAAACATCAT 136661
Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344
| || | | | ||| ||||| || || | || |||| ||| | || |||||||
Sbjct 136662 ACTTATTACTGGAAGAAACTGCACCTGGGACTTCAGGGATACTCTGAATTGTTGCCCACA 136721
Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404
|| || || |||||||| ||||| || | ||| || || || |||| ||||
Sbjct 136722 AGTACTCATCAGGGCTGTAAGTGTCTTTTGGCCACTCAATAAATGAAAGGATTTTGCTGT 136781
Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464
| | ||| || | |||| | | |||||| || || || || || | |
Sbjct 136782 -TTTCTAATAGTGTTCTACAAATCTTCTGCTAATGACAAAATAGGCACTACCAGAAACAA 136840
Query 160465 TCGGTATGGGTATAGGCGGCGTGTCTTTGTC-CTGACCGGTGTTAGACACCACTCCTTTC 160523
| || | | | | || | |||||| ||| || ||||| | || |
Sbjct 136841 TTGGAGTACTGAGAAGTGGTCATTGTTTGTCTCTG-CCTGTGTTCTTTGCTTTACCATCA 136899
Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583
| | | | || |||| |||||||| | | |||| | | ||||| ||| || ||
Sbjct 136900 ATAATCTCATGGTGCTTTTTCCACCTTA-CTTCTT-TAGAGAGGCATTTTTTCTGTTTCC 136957
Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCT-TGACGATCTCTAGGTTCGTCTTGAG 160642
| ||||| |||| | || | ||||| | || ||| || || |||| ||||| |
Sbjct 136958 AAGCTGTTTTCACCTTTAAGGGCTTTCAACCTCTCTGA-TATTTCCTGGTTGGTCTTAAT 137016
Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702
|||||||| | || || | |||||| | ||| ||||| || | || || ||
Sbjct 137017 AGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCACTTTGTACTTCTTCTGTAGAG 137076
Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762
|| ||||||| ||||| ||||||| |||||| ||||| || || || |||
Sbjct 137077 ATCTTTCATGCAGTTAATGTCTGCCT-------GCTCCATGAAGCATATACAACACACTC 137129
Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAA 160822
|| | |||| | |||||| ||||| |||| || || |||||| ||| | ||| ||
Sbjct 137130 TAACTGGCTGGAAATAAAGACATTATCAGAACATGAAACTATTCCCTTCACAG-CAGCAA 137188
Query 160823 GAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGA 160881
|| || | | |||| ||| || || | ||| || | |||||||| | ||||
Sbjct 137189 AAAAGGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGAACATAGA 137248
Query 160882 TGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTA 160941
| | || || || || | |||||| || || |||| | ||| || ||||| ||
Sbjct 137249 TTGATCTTAG---TCTATCAAGCATCTCAATTTTGTGATAAACCACAATTGAGTAAGCAG 137305
Query 160942 TCGGAA 160947
| ||||
Sbjct 137306 TTGGAA 137311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577169306615400
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