Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1394 176 6e-38
seq524 140 4e-27
seq1573 116 5e-20
seq66 91.5 2e-12
>seq1394
Length=1516720
Score = 176 bits (194), Expect = 6e-38
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || |||||||||||||||||||| |||| | ||
Sbjct 143027 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCGGTCTGGATCTCCCGCGAGGTGA 143086
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 143087 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 143146
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 143147 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 143206
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 143207 GCACCTGCTTCAGCACCTTGTA 143228
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||
Sbjct 30495 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 30554
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 30555 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 30614
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 30615 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 30674
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 30675 GCACCTGCTTCAGCACCTTGTA 30696
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||
Sbjct 35493 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGGGGTGA 35552
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 35553 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 35612
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 35613 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 35672
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 35673 GCACCTGCTTCAGCACCTTGTA 35694
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||
Sbjct 47004 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 47063
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 47064 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 47123
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 47124 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 47183
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 47184 GCACCTGCTTCAGCACCTTGTA 47205
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||
Sbjct 59747 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 59806
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 59807 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 59866
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 59867 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 59926
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 59927 GCACCTGCTTCAGCACCTTGTA 59948
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||
Sbjct 123134 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 123193
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 123194 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 123253
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 123254 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 123313
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 123314 GCACCTGCTTCAGCACCTTGTA 123335
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||
Sbjct 166192 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 166133
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 166132 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 166073
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 166072 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 166013
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 166012 GCACCTGCTTCAGCACCTTGTA 165991
Score = 158 bits (174), Expect = 1e-32
Identities = 156/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||
Sbjct 130623 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 130564
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 130563 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 130504
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||||| ||| || || || ||||||||
Sbjct 130503 TGTCGTTGACGAAGGAGTTCATGATGCTCATCGCTTTGGACGAAATCCCGGTGTCGGGGT 130444
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 130443 GCACCTGCTTCAGCACCTTGTA 130422
Score = 143 bits (158), Expect = 3e-28
Identities = 139/178 (78%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428
|| ||||||| ||||||||||| |||| | ||| ||| ||||||||| ||||||||
Sbjct 45667 AGCCGCACGGGCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGTGCGCC 45608
Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488
|| || |||||| | ||||||| |||| ||||||||||| || ||||||||||
Sbjct 45607 AGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATG 45548
Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTC--GGGGTGCACCTGCTTGAGCACCTTGTA 1254544
||| | |||| ||||||||| ||| ||||||||||||||| |||||||||||
Sbjct 45547 CCCATGGCCTTGGACGAGATGCCCGTGTCGGGGGGTGCACCTGCTTCAGCACCTTGTA 45490
>seq524
Length=3181795
Score = 140 bits (154), Expect = 4e-27
Identities = 152/202 (75%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || | | | |||||||||||| ||||||||||| |||| | ||
Sbjct 845999 GCTTGGCCAGCTCCCCAGGGAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGCGAGGTGA 845940
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| ||||| ||| || ||| | | ||||| || | |
Sbjct 845939 TGGTGGAGCGCTTGTTGTAGTGTGCCAGGCGGGACGCTTCGCCGGCAATGCGCTCAAAGA 845880
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| ||||| || |||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 845879 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCTGGGT 845820
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| |||||||||||
Sbjct 845819 GGACCTGCTTCAGCACCTTGTA 845798
>seq1573
Length=591436
Score = 116 bits (128), Expect = 5e-20
Identities = 94/114 (82%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889
|||||||||||| ||||||| |||||||||||||| |||||||||| ||| | | ||
Sbjct 540648 CACCTCCTCGGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 540707
Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943
||| |||| ||||||| |||||||||| ||||||||| |||| ||| || ||
Sbjct 540708 GTACTGGATGGGGAAGATGACAAAGCGGCGGGGGTTGTCCCGCAGCAGCGGCTC 540761
>seq66
Length=40132
Score = 91.5 bits (100), Expect = 2e-12
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095
||||||||||||||||| ||| ||||| ||| | ||| |||| | | |||| |
Sbjct 25247 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGGCTCACCCCCACCGAGTTC 25306
Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155
|| | ||| || || || |||||||||||| ||||||| ||||||||||| || |||
Sbjct 25307 TTCTTCCACGCCATGGGTGGCCGCGAGGGCCTCATCGACACCGCCGTCAAGACAGCTGAG 25366
Query 509156 ACGGG 509160
|||||
Sbjct 25367 ACGGG 25371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106571722717055
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