Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1079 129 4e-24
seq1206 111 1e-18
seq2135 96.9 3e-14
seq2082 86.0 5e-11
>seq1079
Length=2839117
Score = 129 bits (142), Expect = 4e-24
Identities = 364/552 (66%), Gaps = 14/552 (3%)
Strand=Plus/Plus
Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836
|| ||||| || ||||||||||||||||| | | | || | | ||| ||||||||
Sbjct 1550885 GCCCCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAACTCTTTGCCATTGAAG 1550944
Query 281837 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895
|| | || |||| ||| | ||| || ||||||| || || ||||| || || ||
Sbjct 1550945 AAGTCCTGCAGCAGTT-TCTGAATCTTTGGGATACGAGTAGACCCACCAACCAACACGAT 1551003
Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955
|| || | ||| ||||| || ||||| | |||| | | ||||| || || || ||
Sbjct 1551004 GTCGTGGATCTGCGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAG 1551063
Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 282014
| | | |||| ||| | | || ||||| || |||||| |||| | || |
Sbjct 1551064 GGTACCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGG--ACGTG 1551121
Query 282015 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073
|| || ||||| || || | | |||||||| |||||| | | ||||| ||||||
Sbjct 1551122 TAGAAGTCAATGCCCTCATAGAGAGAATCAATTTCAATACTGGCCTGAGTGCTAGAAGAG 1551181
Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCTGA 282129
|| | ||| || |||||||||||||| || | || | || | | ||| | ||
Sbjct 1551182 AGGGTACGCTTTGCACGTTCACATGCAGTGCGCAGGCGACGAACTGCTCTCTTGTTCTCG 1551241
Query 282130 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 282189
|||| |||| | || | || | |||||| || | | | | || | ||
Sbjct 1551242 CTGAT----ATCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCG 1551297
Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249
|||||||||||||| || ||||| | ||||| |||| || | | | || | || |
Sbjct 1551298 GTTATCAAAATCTTCTCCACCCAAGTGAGTATCACCTGCAGTGGATTTCACCTCAAAGAT 1551357
Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309
||||| || | || || || | |||||| ||| ||||| || | ||||| |||||
Sbjct 1551358 GCCATCCTCGATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAG 1551417
Query 282310 TACATTCATTTC 282321
|| ||| ||||
Sbjct 1551418 AACGTTCCTTTC 1551429
Score = 100 bits (110), Expect = 2e-15
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749
|||| | || ||||||||||| | |||| |||| | || || ||||| |||||||
Sbjct 1552543 CAAAGACTGTGTTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCATCACCAATCAACC 1552602
Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809
||||| ||||| || | ||| || ||| || || || ||||| || ||||| ||||
Sbjct 1552603 TCTCTGTGTCTGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCATTGGCAA 1552662
Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869
| || || || || |||| ||| ||||||| ||||| | | || || || | |||||
Sbjct 1552663 TGATCTCCACCTTCCCATGTTGGAATACACCAACACAGGAATAGGTGGTGCCAAGATCAA 1552722
Query 282870 TACCAATAGC 282879
| || | |||
Sbjct 1552723 TTCCGACAGC 1552732
Score = 86.0 bits (94), Expect = 5e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| || || |||||||| |||| |||||||||||| || || || ||||||| | ||
Sbjct 1551534 TTCTTGTCCAGACCATAAGCAATAGCAGCAGCAGTCGGCTCGTTGATAATTCGGAGTACG 1551593
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| || || || || |||| |||||||| || || || | || || || || |||||
Sbjct 1551594 TTGAGCCCTGCGATAGTTCCAGCATCTTTTGTAGCCTGGCGCTGGGAGTCATTGAAATAG 1551653
Query 282452 GCAGGAACAGTAATAACGGC 282471
|| || ||||| | ||| ||
Sbjct 1551654 GCTGGTACAGTGACAACAGC 1551673
>seq1206
Length=7854729
Score = 111 bits (122), Expect = 1e-18
Identities = 280/417 (67%), Gaps = 8/417 (2%)
Strand=Plus/Plus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
||| | || || || |||||||| ||||| | ||||| ||||| || || || |||||
Sbjct 7504500 GCACTGACGTTCAGGATACCATTTGCATCTATGTCAAAAGTGACCTCGATCTGGGGGACT 7504559
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| | | || || ||||| || | || ||| | ||||| || || || ||
Sbjct 7504560 CCACGGGGCGCTGGGGGGATGCCCGTTAGATCAAACTTGCCCAGCAAGTTGTTGTCCTTT 7504619
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 281603
|| | | |||||||| || | |||| || | ||| | | || || || || |
Sbjct 7504620 GTCATAGCCCTCTCACCCTCAAACACCTGGACCAGGACACTGC--TCTGGTTGTCCGAGT 7504677
Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662
| || || || ||||| ||| ||| ||| || || ||||| | | || | | |
Sbjct 7504678 AGGTGGTGAAGG-TCTGGGTTTGTTTGGTAGGGATGGTAGTGTTACGCTTGATGAGAGCG 7504736
Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722
||||| | ||||||||||| || | || || || ||||| |||||||| | ||||
Sbjct 7504737 GTCATCACTCCACCAGCTGTCTCAATGCCCAGGGACAGAGGCGTGACATCCAACAGGAGC 7504796
Query 281723 ATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781
| || || | || || | | || | || | || ||||||||||| | |||||| ||
Sbjct 7504797 AGATCCTGCACGTTCTC-TGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGCC 7504855
Query 281782 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 281838
||| |||||||||||||| ||||| | | | || || | ||| |||||||| ||
Sbjct 7504856 ATAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAA 7504912
>seq2135
Length=2661649
Score = 96.9 bits (106), Expect = 3e-14
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235
||| || || ||| | |||||||| ||||| || ||||| ||||| | | |||||
Sbjct 1250655 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAGGCGGATATCCGGAAGGTTAT 1250714
Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295
|||||| || || || ||| | || ||| ||||||||||||||||| ||||| |||||
Sbjct 1250715 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 1250774
Query 131296 TGATGG 131301
||||||
Sbjct 1250775 TGATGG 1250780
>seq2082
Length=1176775
Score = 86.0 bits (94), Expect = 5e-11
Identities = 102/136 (75%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 131183 GCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTAC 131242
|| ||||| || ||||| ||||| ||| ||||||| ||||| | |||||| ||| |
Sbjct 926133 GCAACAATTGCCTTTGGAATGGGAATTGATAAACCTGATGTACGCTATGTTATCCATGCC 926074
Query 131243 GGAGCTCCCAAGAA-TATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGG 131301
| ||||| | | ||| |||||||||||||||||| ||| ||||| || || |||||
Sbjct 926073 TCA-CTCCCTAAATCTATAGAAGGTTATTATCAAGAATCTGGCAGAGCTGGACGAGATGG 926015
Query 131302 AGAAAAATCTTATTGT 131317
|||| ||| | |||
Sbjct 926014 TGAAATGTCTCACTGT 925999
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740290902722790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |