Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1079 129 4e-24 seq1206 111 1e-18 seq2135 96.9 3e-14 seq2082 86.0 5e-11 >seq1079 Length=2839117 Score = 129 bits (142), Expect = 4e-24 Identities = 364/552 (66%), Gaps = 14/552 (3%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 || ||||| || ||||||||||||||||| | | | || | | ||| |||||||| Sbjct 1550885 GCCCCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAACTCTTTGCCATTGAAG 1550944 Query 281837 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | || |||| ||| | ||| || ||||||| || || ||||| || || || Sbjct 1550945 AAGTCCTGCAGCAGTT-TCTGAATCTTTGGGATACGAGTAGACCCACCAACCAACACGAT 1551003 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 || || | ||| ||||| || ||||| | |||| | | ||||| || || || || Sbjct 1551004 GTCGTGGATCTGCGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAG 1551063 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 282014 | | | |||| ||| | | || ||||| || |||||| |||| | || | Sbjct 1551064 GGTACCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGG--ACGTG 1551121 Query 282015 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 || || ||||| || || | | |||||||| |||||| | | ||||| |||||| Sbjct 1551122 TAGAAGTCAATGCCCTCATAGAGAGAATCAATTTCAATACTGGCCTGAGTGCTAGAAGAG 1551181 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCTGA 282129 || | ||| || |||||||||||||| || | || | || | | ||| | || Sbjct 1551182 AGGGTACGCTTTGCACGTTCACATGCAGTGCGCAGGCGACGAACTGCTCTCTTGTTCTCG 1551241 Query 282130 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 282189 |||| |||| | || | || | |||||| || | | | | || | || Sbjct 1551242 CTGAT----ATCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCG 1551297 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 |||||||||||||| || ||||| | ||||| |||| || | | | || | || | Sbjct 1551298 GTTATCAAAATCTTCTCCACCCAAGTGAGTATCACCTGCAGTGGATTTCACCTCAAAGAT 1551357 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||||| || | || || || | |||||| ||| ||||| || | ||||| ||||| Sbjct 1551358 GCCATCCTCGATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAG 1551417 Query 282310 TACATTCATTTC 282321 || ||| |||| Sbjct 1551418 AACGTTCCTTTC 1551429 Score = 100 bits (110), Expect = 2e-15 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || ||||||||||| | |||| |||| | || || ||||| ||||||| Sbjct 1552543 CAAAGACTGTGTTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCATCACCAATCAACC 1552602 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| || | ||| || ||| || || || ||||| || ||||| |||| Sbjct 1552603 TCTCTGTGTCTGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCATTGGCAA 1552662 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | || || || || |||| ||| ||||||| ||||| | | || || || | ||||| Sbjct 1552663 TGATCTCCACCTTCCCATGTTGGAATACACCAACACAGGAATAGGTGGTGCCAAGATCAA 1552722 Query 282870 TACCAATAGC 282879 | || | ||| Sbjct 1552723 TTCCGACAGC 1552732 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| |||| |||||||||||| || || || ||||||| | || Sbjct 1551534 TTCTTGTCCAGACCATAAGCAATAGCAGCAGCAGTCGGCTCGTTGATAATTCGGAGTACG 1551593 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || || || |||| |||||||| || || || | || || || || ||||| Sbjct 1551594 TTGAGCCCTGCGATAGTTCCAGCATCTTTTGTAGCCTGGCGCTGGGAGTCATTGAAATAG 1551653 Query 282452 GCAGGAACAGTAATAACGGC 282471 || || ||||| | ||| || Sbjct 1551654 GCTGGTACAGTGACAACAGC 1551673 >seq1206 Length=7854729 Score = 111 bits (122), Expect = 1e-18 Identities = 280/417 (67%), Gaps = 8/417 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| | || || || |||||||| ||||| | ||||| ||||| || || || ||||| Sbjct 7504500 GCACTGACGTTCAGGATACCATTTGCATCTATGTCAAAAGTGACCTCGATCTGGGGGACT 7504559 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | || || ||||| || | || ||| | ||||| || || || || Sbjct 7504560 CCACGGGGCGCTGGGGGGATGCCCGTTAGATCAAACTTGCCCAGCAAGTTGTTGTCCTTT 7504619 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 281603 || | | |||||||| || | |||| || | ||| | | || || || || | Sbjct 7504620 GTCATAGCCCTCTCACCCTCAAACACCTGGACCAGGACACTGC--TCTGGTTGTCCGAGT 7504677 Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || ||||| ||| ||| ||| || || ||||| | | || | | | Sbjct 7504678 AGGTGGTGAAGG-TCTGGGTTTGTTTGGTAGGGATGGTAGTGTTACGCTTGATGAGAGCG 7504736 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||||||||| || | || || || ||||| |||||||| | |||| Sbjct 7504737 GTCATCACTCCACCAGCTGTCTCAATGCCCAGGGACAGAGGCGTGACATCCAACAGGAGC 7504796 Query 281723 ATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781 | || || | || || | | || | || | || ||||||||||| | |||||| || Sbjct 7504797 AGATCCTGCACGTTCTC-TGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGCC 7504855 Query 281782 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 281838 ||| |||||||||||||| ||||| | | | || || | ||| |||||||| || Sbjct 7504856 ATAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAA 7504912 >seq2135 Length=2661649 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | |||||||| ||||| || ||||| ||||| | | ||||| Sbjct 1250655 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAGGCGGATATCCGGAAGGTTAT 1250714 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 1250715 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 1250774 Query 131296 TGATGG 131301 |||||| Sbjct 1250775 TGATGG 1250780 >seq2082 Length=1176775 Score = 86.0 bits (94), Expect = 5e-11 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 131183 GCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTAC 131242 || ||||| || ||||| ||||| ||| ||||||| ||||| | |||||| ||| | Sbjct 926133 GCAACAATTGCCTTTGGAATGGGAATTGATAAACCTGATGTACGCTATGTTATCCATGCC 926074 Query 131243 GGAGCTCCCAAGAA-TATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGG 131301 | ||||| | | ||| |||||||||||||||||| ||| ||||| || || ||||| Sbjct 926073 TCA-CTCCCTAAATCTATAGAAGGTTATTATCAAGAATCTGGCAGAGCTGGACGAGATGG 926015 Query 131302 AGAAAAATCTTATTGT 131317 |||| ||| | ||| Sbjct 926014 TGAAATGTCTCACTGT 925999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740290902722790