Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq1135 105 9e-18 seq1189 104 3e-17 seq551 104 3e-17 seq1866 100 4e-16 >seq1135 Length=6065349 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 1212356 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 1212297 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 1212296 CCCCGACGGGGAG 1212284 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 1212355 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1212296 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 1212295 CCCGACGGGGAGG 1212283 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1212284 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1212343 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1212344 TACTAACGAGGA 1212355 >seq1189 Length=11086764 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11725 CCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTC 11783 |||| ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 6830298 CCCACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 6830239 Query 11784 GATTCCCCGACGAGGAG 11800 |||||||||||| |||| Sbjct 6830238 GATTCCCCGACGGGGAG 6830222 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 6830293 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 6830234 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 6830233 CCCGACGGGGAG 6830222 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 6830222 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 6830281 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 6830282 TACTAACGAGGA 6830293 >seq551 Length=8489217 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 2128575 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2128516 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 2128515 CCCCGACGGGGAGG 2128502 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2128574 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2128515 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 2128514 CCCGACGGGGAG 2128503 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2128503 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2128562 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 2128563 TACTAACGAGGA 2128574 >seq1866 Length=6343108 Score = 100 bits (110), Expect = 4e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 457416 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 457475 Query 8717 CCCCGACGAGGAG 8729 ||| |||| |||| Sbjct 457476 CCCTGACGGGGAG 457488 Score = 96.9 bits (106), Expect = 5e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 457417 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 457476 Query 11789 CCCGACGAGGAGG 11801 || |||| ||||| Sbjct 457477 CCTGACGGGGAGG 457489 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||| |||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 457488 CTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 457429 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 457428 TACTAACGAGGA 457417 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||| ||| |||||| ||| |||| |||| ||||| | |||||||||||||||||||| Sbjct 497587 TTCCTGGTTGGTATAGGGGTAAGTACCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 497528 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 497527 CCCCGACGGGGAG 497515 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||| ||| |||||| |||| ||| |||| ||||| | ||||||||||||||||||||| Sbjct 497586 TCCTGGTTGGTATAGGGGTAAGTACCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 497527 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 497526 CCCGACGGGGAGG 497514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652788369727600