Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq1135 105 9e-18
seq1189 104 3e-17
seq551 104 3e-17
seq1866 100 4e-16
>seq1135
Length=6065349
Score = 105 bits (116), Expect = 9e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 1212356 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 1212297
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 1212296 CCCCGACGGGGAG 1212284
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 1212355 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1212296
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 1212295 CCCGACGGGGAGG 1212283
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 1212284 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1212343
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 1212344 TACTAACGAGGA 1212355
>seq1189
Length=11086764
Score = 104 bits (114), Expect = 3e-17
Identities = 70/77 (91%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 11725 CCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTC 11783
|||| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||
Sbjct 6830298 CCCACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 6830239
Query 11784 GATTCCCCGACGAGGAG 11800
|||||||||||| ||||
Sbjct 6830238 GATTCCCCGACGGGGAG 6830222
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 6830293 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 6830234
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 6830233 CCCGACGGGGAG 6830222
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 6830222 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 6830281
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 6830282 TACTAACGAGGA 6830293
>seq551
Length=8489217
Score = 104 bits (114), Expect = 3e-17
Identities = 68/74 (92%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 2128575 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2128516
Query 11788 CCCCGACGAGGAGG 11801
|||||||| |||||
Sbjct 2128515 CCCCGACGGGGAGG 2128502
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2128574 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2128515
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 2128514 CCCGACGGGGAG 2128503
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2128503 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2128562
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 2128563 TACTAACGAGGA 2128574
>seq1866
Length=6343108
Score = 100 bits (110), Expect = 4e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 457416 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 457475
Query 8717 CCCCGACGAGGAG 8729
||| |||| ||||
Sbjct 457476 CCCTGACGGGGAG 457488
Score = 96.9 bits (106), Expect = 5e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 457417 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 457476
Query 11789 CCCGACGAGGAGG 11801
|| |||| |||||
Sbjct 457477 CCTGACGGGGAGG 457489
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| |||| |||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 457488 CTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 457429
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 457428 TACTAACGAGGA 457417
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
||||| ||| |||||| ||| |||| |||| ||||| | ||||||||||||||||||||
Sbjct 497587 TTCCTGGTTGGTATAGGGGTAAGTACCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 497528
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 497527 CCCCGACGGGGAG 497515
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||| ||| |||||| |||| ||| |||| ||||| | |||||||||||||||||||||
Sbjct 497586 TCCTGGTTGGTATAGGGGTAAGTACCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 497527
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 497526 CCCGACGGGGAGG 497514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652788369727600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |