Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1011 138 1e-27 seq551 136 4e-27 seq241 93.3 4e-14 seq860 91.5 1e-13 >seq1011 Length=3435084 Score = 138 bits (152), Expect = 1e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || || ||| | || || ||||||||||| Sbjct 2733963 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCC 2734022 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||||||||| || |||||||||||||| |||||| ||| Sbjct 2734023 AGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 2734082 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 2734083 GACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 2734142 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 2734143 CTTCACAAAGATCTGCATG 2734161 Score = 138 bits (152), Expect = 1e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || || ||| | || || ||||||||||| Sbjct 2734191 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCC 2734250 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||||||||| || |||||||||||||| |||||| ||| Sbjct 2734251 AGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 2734310 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 2734311 GACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 2734370 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 2734371 CTTCACAAAGATCTGCATG 2734389 Score = 138 bits (152), Expect = 1e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || || ||| | || || ||||||||||| Sbjct 2734419 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCC 2734478 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||||||||| || |||||||||||||| |||||| ||| Sbjct 2734479 AGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 2734538 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 2734539 GACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 2734598 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 2734599 CTTCACAAAGATCTGCATG 2734617 Score = 138 bits (152), Expect = 1e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || || ||| | || || ||||||||||| Sbjct 2734647 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCC 2734706 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||||||||| || |||||||||||||| |||||| ||| Sbjct 2734707 AGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 2734766 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 2734767 GACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 2734826 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 2734827 CTTCACAAAGATCTGCATG 2734845 >seq551 Length=8489217 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| || ||| | || || ||||||||||| Sbjct 2123324 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 2123383 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| ||||| |||||||||||||| |||||| ||| Sbjct 2123384 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2123443 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 2123444 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 2123503 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 2123504 TTCACAAAGATCTGCATG 2123521 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| || ||| | || || ||||||||||| Sbjct 2123552 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 2123611 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| ||||| |||||||||||||| |||||| ||| Sbjct 2123612 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2123671 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 2123672 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 2123731 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 2123732 TTCACAAAGATCTGCATG 2123749 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| || ||| | || || ||||||||||| Sbjct 2123780 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCTTCCAGCTGCTTGCCA 2123839 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| ||||| |||||||||||||| |||||| ||| Sbjct 2123840 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2123899 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 2123900 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 2123959 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 2123960 TTCACAAAGATCTGCATG 2123977 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| || ||| | || || ||||||||||| Sbjct 2124008 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 2124067 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| ||||| |||||||||||||| |||||| ||| Sbjct 2124068 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2124127 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| ||| || || |||| || Sbjct 2124128 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCCCTGTCAAGGTC 2124187 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 2124188 TTCACAAAGATCTGCAT 2124204 >seq241 Length=77657 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 133557 CCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCG 133616 ||||||||||| |||||| ||||| | ||| | |||||| |||||||||| ||| Sbjct 76667 CCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCG 76608 Query 133617 ACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| ||||||||| ||||| || || ||||| |||||||| Sbjct 76607 AGGGTGATGGTTTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 76564 >seq860 Length=330425 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | ||||| |||||||||||||| |||| ||||| |||||| Sbjct 178942 TACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATAGTTCCCAAGTTCTGCTGATTG 179001 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||| | |||||| | ||| |||||||||||||| || |||||| || Sbjct 179002 CTCTTCCGGTTGCAGGAGTCTTTGTACAGCATGTAAGGGGTGCCAGTCTC 179051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483379014314600