Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq2134 136 5e-27
seq1682 134 2e-26
seq1723 114 1e-20
>seq2134
Length=278093
Score = 136 bits (150), Expect = 5e-27
Identities = 560/877 (64%), Gaps = 7/877 (1%)
Strand=Plus/Plus
Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179
|| |||||| || || || ||| || ||| | || ||||| || | || ||
Sbjct 143761 ATTGAACTTATTAGCAAAGTAGTGGTG---GTTTTGCAGCATCCAGTTCAAGTCTCCTAC 143817
Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239
||| ||||| || || || | ||||| | || ||||| || || || | || || |
Sbjct 143818 TCCAAACACACAGACAGAGTGAACGTGAATCCCACTGCATGGTGGGTAGGGCGCACCTTT 143877
Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299
|||||| || ||| |||| |||||||| || ||||| | | || | |||||| ||
Sbjct 143878 AGACACATCACCTTCGAAGTACTGCCACTTCACAAACCTGGCCAGTGCATTCATGTCAGA 143937
Query 162300 GGTGTCGTACTTGTACACTG-ACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
|| ||||| | |||| | | || || || || || | || | |||||| | |
Sbjct 143938 AACATCATACTTATT-ACTGGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGGATTG 143996
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| |||||||||| || || || || || || || || | ||| || || || ||
Sbjct 143997 TTGCCCACAGGTACTCATCGGGGCTGTAAGTGTCTTTTGCCCATTCAATAAATGAAAGGA 144056
Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478
| | | | || |||| || | ||| | || | ||| || || ||||
Sbjct 144057 TTTTGCTGTTTTCTAATATGTGTTCTACAAATCTTCTGCTAACGACAAAATAGGCACTAC 144116
Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538
||||||| | || | | | ||| || | | ||||||| || ||||| |||
Sbjct 144117 CAGAAAAAATTGGGGTACTGAGAGGTGGTCGTTGTTTGTCTATGCCTGTGTTCTTTACTT 144176
Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598
| || || | | | | || ||| ||||||| | ||| | || | | ||
Sbjct 144177 TACCGTCAATAATCTCATGGTGCTTTTTCCACCTTACTTCTTTAGAGAGAGGCATTTTTT 144236
Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658
| || || | || || ||| | ||| |||||| || || || | ||||
Sbjct 144237 CTGTTTCCAAGCTATTTTCACCTTTGAGGGCTTTCAGCCTCTCTACTATTTCCTGGTTGG 144296
Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718
|||||| |||||||| |||| ||||| || || | ||||||||||| || ||
Sbjct 144297 TCTTAATAGGAAAGTCCATGCCACAGAGGTTTATTAAGTATTTCCACTTTGTACTTCTTC 144356
Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778
||| ||||| | | ||||| | ||| ||||| || | ||||| || || || || |
Sbjct 144357 TGTAGAGATCTTTCATGCAGTTAATATCTGCCTGCACCCTGCTCCAGGAAGCATATACAA 144416
Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGG 162838
| ||||| ||| ||| | ||| ||||| || ||||| |||||||| ||| |||| |
Sbjct 144417 CACTCTCTAACTGGCTGGAAATAAAAACATTATCAAAACATGAAACTATTCCCTTCACAG 144476
Query 162839 CCAGTGAGAA-CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGG 162897
| |||| || | |||| | || || || | |||||| | |||||||||
Sbjct 144477 CAGCAAAGAAGGATTCTGGAGACTTT-TTGTCAACATGAATGCAGTAAAAATTCTGAGGA 144535
Query 162898 GCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAA 162957
|| ||||| | || || | ||| || | |||||| || || || | |||||| | ||
Sbjct 144536 GCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATATACCACTACTGAG 144595
Query 162958 TACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994
|| || || || || || || ||||| |||||||
Sbjct 144596 TAAGCAATTGGAAATTCTGCTTCCTCATTGCTGAGAG 144632
>seq1682
Length=19375980
Score = 134 bits (148), Expect = 2e-26
Identities = 260/378 (69%), Gaps = 8/378 (2%)
Strand=Plus/Minus
Query 162610 CTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGA 162669
||||| || ||| || ||||||| || || ||||| |||||||||| |||
Sbjct 16301051 CTGTTCCGCCCCTGCAGCACCTTCAGGGTGCGGACGATCTCGGCGTTGGTCTTAATGGGG 16300992
Query 162670 AAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGATC 162728
|||||||||||||| || | | || ||| || | || || | | ||| ||
Sbjct 16300991 AAGTCGGTGCCGCAAGTGTTGAGGAGGTAGCGCCAGGGCAC-CGGACTCTGGAGCAGGTC 16300933
Query 162729 CTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAA 162788
||| | |||||||||||| ||||| | || ||| || ||||| || ||| ||||||
Sbjct 16300932 CTGCATACAGTTCAGATCAGCCTGCAGCCGGGACCAGGAGGCGTAGACCACGTTCTCCAG 16300873
Query 162789 CCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAG-TG--A 162845
| |||| |||||||| ||| ||| || | | | || | ||| ||| || |
Sbjct 16300872 GCGGCTGGCCACAAAGACGTTGGGGAAGCAGGCAGCGATGGCTCGCACAGCCTCCTGGAA 16300813
Query 162846 GAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGAT 162905
| | ||| | || || || | ||| |||||||| || ||||| ||||| |||||
Sbjct 16300812 GGAGGCTGGGGAC---TTGCTGTCCATGTGGACGCAGTAGAGGTTCTGGGGGGCATAGAT 16300756
Query 162906 GGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTAT 162965
|| || ||| | |||||||||||||| || || | ||| | || || || || || ||
Sbjct 16300755 GGACCGCAGGAGCCTCTCGAACATCTCGATTTTGTCGTGGATGACCATGGAGTAGGCGAT 16300696
Query 162966 GGGGAACTCAGCCTCCTC 162983
||||||||| ||||||||
Sbjct 16300695 GGGGAACTCGGCCTCCTC 16300678
>seq1723
Length=1451285
Score = 114 bits (126), Expect = 1e-20
Identities = 377/575 (66%), Gaps = 17/575 (3%)
Strand=Plus/Plus
Query 176976 ACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAGT 177035
|| || ||||| | |||| | || | |||||| || || || ||||| || | || |||
Sbjct 1025085 ACATGTATGAATGAGTCTGCTGGAATGTAATTCTCATAGTTTTCTCTGGAAGGGCCCAGT 1025144
Query 177036 ACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCTG 177095
|| | ||||| | || |||| ||||| ||| ||||| || ||||| || || ||
Sbjct 1025145 ACAACTGGTACTGATCCAGCCAGAAGAGCATTGTAAAGTTTCTCAGTAATGTAATCTTTG 1025204
Query 177096 TGTACGGAGTTCTCAAACGCGAGATAGAATTTACAG--GAAGATAGTAGCGGGATGAAGT 177153
|| | || || ||||| | ||||||||||||||| | ||||||| || || ||||
Sbjct 1025205 TGGATTGAATTTTCAAATGAAAGATAGAATTTACAGGTGGAGATAGT--TGGAATCAAGT 1025262
Query 177154 CATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTAC 177213
| ||| | ||| ||||| | | | || || ||| || || || | ||| |
Sbjct 1025263 TTTTATCATTGACATAGTCTCCAAAGGCTTGTCCATAGGTATGGATTTCAATATATTTGC 1025322
Query 177214 TGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCAG 177272
| ||||| ||| || || || || | || || |||||| || || || |||||
Sbjct 1025323 TAAGCTCATTGTAATA-CTTGACTCGAGCATGCTCAGGGTTCCAGTTACTTACAACCCAA 1025381
Query 177273 CAAACTAACTTGCTCTTTGC-GGGAACGGGATTC-GATACTAATGCAGTGTCTCTGAGCG 177330
|| || || || ||||| | || || ||| || |||| | | | | |
Sbjct 1025382 CACACCAAGTT-TTCTTTACTTGGCAC----TTCAAATGTAAATGAACTTGTACCAACCA 1025436
Query 177331 TTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGA 177390
| | | ||||| ||||| |||||||| || ||||| | || || | || || || |
Sbjct 1025437 TCATGAAGCCATAAGGCACCTGAATATCTGAATCGCGCCGATAAGTCAGGGTCAGGTTAA 1025496
Query 177391 AAAGGTTTTCTATAC--CTTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCA 177448
| || | ||| || | ||| |||| || | | | | || || || || ||||||||
Sbjct 1025497 AGAGATGTTCAATGCCACTTTTTTG--TGGAGTATGAGTTGGAGACTCCAAATTCATCCA 1025554
Query 177449 TATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTTAT 177508
|||||||| || || | ||| |||| || | ||||| | || |||| || ||
Sbjct 1025555 AATCCACTTCTGGAATGGTGGCCTGGCTTGCTGAGGTAAATTAGTTAGATCCCAGCTGAT 1025614
Query 177509 CTCTCTGTGGTGAAAGACTACGGCATTGGCTTTGT 177543
|| ||||| |||| || ||||| | || | |||
Sbjct 1025615 GTCCCTGTGATGAATGAGAACGGCGTGGGATCTGT 1025649
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578382001784000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |