Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2134 136 5e-27 seq1682 134 2e-26 seq1723 114 1e-20 >seq2134 Length=278093 Score = 136 bits (150), Expect = 5e-27 Identities = 560/877 (64%), Gaps = 7/877 (1%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 || |||||| || || || ||| || ||| | || ||||| || | || || Sbjct 143761 ATTGAACTTATTAGCAAAGTAGTGGTG---GTTTTGCAGCATCCAGTTCAAGTCTCCTAC 143817 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| ||||| || || || | ||||| | || ||||| || || || | || || | Sbjct 143818 TCCAAACACACAGACAGAGTGAACGTGAATCCCACTGCATGGTGGGTAGGGCGCACCTTT 143877 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 |||||| || ||| |||| |||||||| || ||||| | | || | |||||| || Sbjct 143878 AGACACATCACCTTCGAAGTACTGCCACTTCACAAACCTGGCCAGTGCATTCATGTCAGA 143937 Query 162300 GGTGTCGTACTTGTACACTG-ACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 || ||||| | |||| | | || || || || || | || | |||||| | | Sbjct 143938 AACATCATACTTATT-ACTGGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGGATTG 143996 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | |||||||||| || || || || || || || || | ||| || || || || Sbjct 143997 TTGCCCACAGGTACTCATCGGGGCTGTAAGTGTCTTTTGCCCATTCAATAAATGAAAGGA 144056 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 | | | | || |||| || | ||| | || | ||| || || |||| Sbjct 144057 TTTTGCTGTTTTCTAATATGTGTTCTACAAATCTTCTGCTAACGACAAAATAGGCACTAC 144116 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 ||||||| | || | | | ||| || | | ||||||| || ||||| ||| Sbjct 144117 CAGAAAAAATTGGGGTACTGAGAGGTGGTCGTTGTTTGTCTATGCCTGTGTTCTTTACTT 144176 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 | || || | | | | || ||| ||||||| | ||| | || | | || Sbjct 144177 TACCGTCAATAATCTCATGGTGCTTTTTCCACCTTACTTCTTTAGAGAGAGGCATTTTTT 144236 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || || | || || ||| | ||| |||||| || || || | |||| Sbjct 144237 CTGTTTCCAAGCTATTTTCACCTTTGAGGGCTTTCAGCCTCTCTACTATTTCCTGGTTGG 144296 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 |||||| |||||||| |||| ||||| || || | ||||||||||| || || Sbjct 144297 TCTTAATAGGAAAGTCCATGCCACAGAGGTTTATTAAGTATTTCCACTTTGTACTTCTTC 144356 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| ||||| | | ||||| | ||| ||||| || | ||||| || || || || | Sbjct 144357 TGTAGAGATCTTTCATGCAGTTAATATCTGCCTGCACCCTGCTCCAGGAAGCATATACAA 144416 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGG 162838 | ||||| ||| ||| | ||| ||||| || ||||| |||||||| ||| |||| | Sbjct 144417 CACTCTCTAACTGGCTGGAAATAAAAACATTATCAAAACATGAAACTATTCCCTTCACAG 144476 Query 162839 CCAGTGAGAA-CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGG 162897 | |||| || | |||| | || || || | |||||| | ||||||||| Sbjct 144477 CAGCAAAGAAGGATTCTGGAGACTTT-TTGTCAACATGAATGCAGTAAAAATTCTGAGGA 144535 Query 162898 GCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAA 162957 || ||||| | || || | ||| || | |||||| || || || | |||||| | || Sbjct 144536 GCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATATACCACTACTGAG 144595 Query 162958 TACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || || || || || || || ||||| ||||||| Sbjct 144596 TAAGCAATTGGAAATTCTGCTTCCTCATTGCTGAGAG 144632 >seq1682 Length=19375980 Score = 134 bits (148), Expect = 2e-26 Identities = 260/378 (69%), Gaps = 8/378 (2%) Strand=Plus/Minus Query 162610 CTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGA 162669 ||||| || ||| || ||||||| || || ||||| |||||||||| ||| Sbjct 16301051 CTGTTCCGCCCCTGCAGCACCTTCAGGGTGCGGACGATCTCGGCGTTGGTCTTAATGGGG 16300992 Query 162670 AAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGATC 162728 |||||||||||||| || | | || ||| || | || || | | ||| || Sbjct 16300991 AAGTCGGTGCCGCAAGTGTTGAGGAGGTAGCGCCAGGGCAC-CGGACTCTGGAGCAGGTC 16300933 Query 162729 CTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAA 162788 ||| | |||||||||||| ||||| | || ||| || ||||| || ||| |||||| Sbjct 16300932 CTGCATACAGTTCAGATCAGCCTGCAGCCGGGACCAGGAGGCGTAGACCACGTTCTCCAG 16300873 Query 162789 CCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAG-TG--A 162845 | |||| |||||||| ||| ||| || | | | || | ||| ||| || | Sbjct 16300872 GCGGCTGGCCACAAAGACGTTGGGGAAGCAGGCAGCGATGGCTCGCACAGCCTCCTGGAA 16300813 Query 162846 GAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGAT 162905 | | ||| | || || || | ||| |||||||| || ||||| ||||| ||||| Sbjct 16300812 GGAGGCTGGGGAC---TTGCTGTCCATGTGGACGCAGTAGAGGTTCTGGGGGGCATAGAT 16300756 Query 162906 GGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTAT 162965 || || ||| | |||||||||||||| || || | ||| | || || || || || || Sbjct 16300755 GGACCGCAGGAGCCTCTCGAACATCTCGATTTTGTCGTGGATGACCATGGAGTAGGCGAT 16300696 Query 162966 GGGGAACTCAGCCTCCTC 162983 ||||||||| |||||||| Sbjct 16300695 GGGGAACTCGGCCTCCTC 16300678 >seq1723 Length=1451285 Score = 114 bits (126), Expect = 1e-20 Identities = 377/575 (66%), Gaps = 17/575 (3%) Strand=Plus/Plus Query 176976 ACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAGT 177035 || || ||||| | |||| | || | |||||| || || || ||||| || | || ||| Sbjct 1025085 ACATGTATGAATGAGTCTGCTGGAATGTAATTCTCATAGTTTTCTCTGGAAGGGCCCAGT 1025144 Query 177036 ACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCTG 177095 || | ||||| | || |||| ||||| ||| ||||| || ||||| || || || Sbjct 1025145 ACAACTGGTACTGATCCAGCCAGAAGAGCATTGTAAAGTTTCTCAGTAATGTAATCTTTG 1025204 Query 177096 TGTACGGAGTTCTCAAACGCGAGATAGAATTTACAG--GAAGATAGTAGCGGGATGAAGT 177153 || | || || ||||| | ||||||||||||||| | ||||||| || || |||| Sbjct 1025205 TGGATTGAATTTTCAAATGAAAGATAGAATTTACAGGTGGAGATAGT--TGGAATCAAGT 1025262 Query 177154 CATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTAC 177213 | ||| | ||| ||||| | | | || || ||| || || || | ||| | Sbjct 1025263 TTTTATCATTGACATAGTCTCCAAAGGCTTGTCCATAGGTATGGATTTCAATATATTTGC 1025322 Query 177214 TGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCAG 177272 | ||||| ||| || || || || | || || |||||| || || || ||||| Sbjct 1025323 TAAGCTCATTGTAATA-CTTGACTCGAGCATGCTCAGGGTTCCAGTTACTTACAACCCAA 1025381 Query 177273 CAAACTAACTTGCTCTTTGC-GGGAACGGGATTC-GATACTAATGCAGTGTCTCTGAGCG 177330 || || || || ||||| | || || ||| || |||| | | | | | Sbjct 1025382 CACACCAAGTT-TTCTTTACTTGGCAC----TTCAAATGTAAATGAACTTGTACCAACCA 1025436 Query 177331 TTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGA 177390 | | | ||||| ||||| |||||||| || ||||| | || || | || || || | Sbjct 1025437 TCATGAAGCCATAAGGCACCTGAATATCTGAATCGCGCCGATAAGTCAGGGTCAGGTTAA 1025496 Query 177391 AAAGGTTTTCTATAC--CTTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCA 177448 | || | ||| || | ||| |||| || | | | | || || || || |||||||| Sbjct 1025497 AGAGATGTTCAATGCCACTTTTTTG--TGGAGTATGAGTTGGAGACTCCAAATTCATCCA 1025554 Query 177449 TATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTTAT 177508 |||||||| || || | ||| |||| || | ||||| | || |||| || || Sbjct 1025555 AATCCACTTCTGGAATGGTGGCCTGGCTTGCTGAGGTAAATTAGTTAGATCCCAGCTGAT 1025614 Query 177509 CTCTCTGTGGTGAAAGACTACGGCATTGGCTTTGT 177543 || ||||| |||| || ||||| | || | ||| Sbjct 1025615 GTCCCTGTGATGAATGAGAACGGCGTGGGATCTGT 1025649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578382001784000